RNA id: XM_043258789.1


Basic Information

Item Value
RNA id XM_043258789.1
length 4632
RNA type mRNA
GC content 0.47
exon number 15
gene id kirrel3l
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19955988 ~ 19997163 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCCCAGTGGGAAAAAAAGCGCCCGTTTTACGCATCGAGCCAGCATCCAGTCAGTAGTACGACAGCCAGCGCGGATCGCATCCTCGTCTTGCCGTCGCATTACAAGAGAGCGAGGAGCGAACAGAGCAGTACGAGGGACCTGCGCGCAAGAGGAGGCGTTTACGCGCGCTATAGAGCTTGTGGTGCTGAAACGCGCTCAGTCGCGCCGGCGAGCGGAGCCCCGCTGATCAGGAGAAacggagatttttttttgttgttatcaCCCCTACACGGAGGATTTACTCCAAACACTTGGATTGATTCGAGACCCGCGCGTTGAAGCCGCTTCATCCGAACACGATTCTGGTTGGGAAATATTAACCGAACAACGAGAGAAAGTTCTAAACTTTAAAGAGACAACCGGCATTGATGCTTAGACTGTATTCGGATGGCAGTAAAGACTTCCAGCTCTCAGAGCTGAGGTTAACGTAATCtgctgtgtttaattttttttttacccaattCAAGAGGTGGGCGAGGACCAGCTTCCACATCCAGTCCAGCCGGAGCTTCCGAGCGCACACTTTCAATCTGGACTGCAGGACAAGTGTCGAAGACTCCGGAAAGATGTTGACGTTTTACATCGCATTGTGCCTTTTAGGAACAGTGTCTCAAGCAGCCTACTtttcccagcagccccaggATCAAGTAGTGGTTGCTGGCCAATCAGTAACCTTGCCCTGTGTGATTGTGGGATACCGGGGCATGGTACAGTGGACCAAAGATGGTTTGGCGCTAGGCGGTGAACGAGACCTACCCGGTTGGGTACGTTACTCTCTGATGGGAGACCCGCTATCAGGAGAGCACAGCTTGGTGATCGATTCAGCTGAGCTTGGCGATGATGCGGTCTACGAGTGTCAAGCCACGCAGGCTGGGCTGCGATCACACAGAGCCAAACTAACGGTGCTGGTGCCACCTTCAGATCCTGTAGTGGAGGGAGGGCCAGTGGTCCGTCTCAAAGCTCATACATCTCATAACCTGACATGCCGGGCATCTGGAGCCAAACCTGCCGCAGAGATTACCTGGTACCGAGACGGAGAGATAATGCATGATGCTGTCTACTCAAAGACTTTGATGGAGgatggaaagagagaaacagcGGTTAGCATGCTACCCATGGTGCCTGAGGACAGCGATTCTGGACGTACATACACCTGCAGGGTCCTAAACCCGGCCGCTCCAGCAGGTCGCCAAACTTCAGTTACCATCAGCGTTCAGCATCCTCCGTCTGTGACTCTCTCTGTTCAGCCTCAGACGGTGATGGAGGGAGCAAAAGTGTTGTTCATCTGCTCTGCCTCTGCCAACCCTGAGATCACAGGTTACAGATGGTCCAAAGGTGGGGTTCCTATCTCAGAGGCCAATGGTGACAGCCTGGAGGTGACTGTAGACCACTCATACTTCACAGACCCAGTGTCCTGCGAAGTGTCTAACTCAGTAGGAAGTACTAATGTCAGCACCTTGGTGGATGTACAATttggACCCAGGTTGCTGACCGAACCAAAACCCCAGATAGTAGACATAGGGATGGATGCTGCTTTCACATGTTCATGGACGGGCAACCCTCCACTCACTCTGGCCTGGACTAAACAAGGCTCCAGTGTGgtGCTCAGCAATAGTAACACCCTTCAGCTGAAAGCAGTTACACAAGAGGATTCTGGGACATACACCTGCAAAGCCATTGTGCCTCGGATTGGTGTGGCAGAGAGAGATGTAACTCTAACTGTCAATGGCCCTCCCATCATCACAGCTGAGACAACGCAGCAGGCCGTCAAGCATTCCAAGGGCAAGCTGGAGTGTCTAGTGGGCAGTAGCCCTCCTCCTGACAAGATTGTGTGGACCTTTGGAGACATGATCTTGTCATCTGGCTCTTCCGGTCGTTTTTCCGTGCAGACAGTACACAGTGACCGGGGGGTCCTCTCCTCGCTAATCCTCTCAGAGACTCTGGCCCAGGATTTCCAGCTTCGTTACAACTGCACTGCTTGGAACCGCTTTGGTACAGGCACGGCACTGGTCACTCTTGAAGAGCAAGAGGCCCTCCCCTTGCTAATAATCATTGGAGCATCGGTGGGCGGAGGCTGTGTCTTCATCGTTTGTGTCATTACCCTGGTTTCCATCTGCTGCCGCCACAATGCTAAAgGCAAAAAGGGCACACGCCTGTCTAAGAGTGACATCCGCGTTCAAATTGTGCACAGCGACCACAACGCAGCAAGAGGAAACGACGATGAGGAGGATGTAAAGGAGCCTATGGCTCCAAACAGCAGTGAGTCTCCAGGAACGTCTCGCACCGAACACAGCGACCTGCTggaagaggaggatgatgagAGATCAGATATCAAGGATCCCACCAATGGCTACTACAATGTGCGAGCTCACGAGGACCGCCACATTACAAGAACTGGGTTCTCTGAATATGTTCCTAATGCTCGCCCAGTGTACACTCCCTCTCAGCTTCCCTCGCCGAGCCCCTTATACGGCCAACACTCCAGTCAGCCTCGGATTTATGACTTCTCCCAGCGTTACGCCACAACCCCTGCCACACGCACTACCTATGAGCAACAGCAGTCTCAACAACCACAGCAACAACAGCAAACTCCTACCATCTATCCTCAGGAGCCACTCTATGCTGGCTCCGCCTACCTTCCCGCCACCTATGGCCGCGCCTTCACAAGCTATGTCAAACCTGCATCCTTTGAGAAGGTTGATGGGTACGAGCATTCAGACCAGGCCAGCAAGGTGTCCAACTCATCGCGTTTCTCATACGCATCCTCACAGGTGTCGTCACAGCAGTCTGACTATGGCCGGCCCTCGCAGCAACGCATGCAGACTCATGTGTGATGGCTCCCTCGAAGACCCGCTGAGGGTCCAGCATGATCAGCATCACAAGGACTTTCTTCTGAACGGGTTCAGGAGGGATTAAGCAAACTTTAAACTAAGATTCAAGAGGCGGAAAAGCTTTATTGCTATCTTGAAGTGAATGTTGGATCGATGGAAATCGAAACAGAAAACGAAAAAGAACTGCAACGTGCCAAGCTTAGAAGTCACCATCAAGCTATTTTCTTCGTCCAAATGTTGAACTTTAAGGGAAATAAACATCATCCATCAATTCGTCTCTATGGCACTATATCTCCACTAAAAAAGGCTCCAGCATTGACCCTTCTAGATCTCGGAGAAGGAAAGCAATGCCGTGGAGAAGGGCAGTGTTCTCATGAACTAATCTTTGCAAATGAGGACAAGCTCATGACACTACGCTGAAAcaatcaaaatgaaatgaacttaaaaaaatttaaaaagtaaaaaaaaaaaaaaagtgtttgttggCATGCTGATGGAATTGTAAGCACATTTGTGTATCAATGACAACAGGTCTTGCCTACACAAAGTGGCTCAAAGTTTAATCCACAAAGCAGGGGAGCAGAAGAAAGCAGAGCGCATGCGCTCACCCTGAGATATTTCTTCAGAAGCTCTATCTGCAGTATGCACTGCTGTTGGGCTAGCGAGAGAGTATTTATGTAAAGCCTCAATGGACCAGTGCAGGAAACTGGAATCTGGAAtgctttagttaaaaaaaaaaaaagaaattatggacaaaatccataaaatttatttctgtctgtttgaTGGAACCAAGATTGGCCAATCCCCAAAGAATCAAATTTAGAGGTGCGGTCTTTTTAAGCTATACTCTCAAGGATTTGTTGCAGAGTTCAGAGTAGAGCCCATTTCGGGACCACGGTTTCTTAAGTCAAGCCATGTACGGCAAACCTAATTTACAGCACGACCTTGTGGCGTGCAGTAATAATCTTGTAATGTTCCTTACGTGACCACtgtatgttataaatacaaAGTGTGCCAAGGTGACTGTTATGTCATGCTGACATGGCTGACACCGTCAGGTAGCACCAACATGTTTacatagaagaaaaaaactgaaaaaaagaaatagcaaGTAAAAATGCAGTACTGTCCATATCCACTTAGAGCCACTTCAATGACTGTACAAATTGTTGGGAAATTCACTCCTGTCTGTTGCATGCAGATGATGTGTGTACGTGAACGTATTCAGCATTTCTTCTCATCTGTTTGTTCCTTGTGTGAGAACCGCTTAACTGCACCCTACGTCTATTCGATCTTGGATACCTGCATTTGGAGGTTACCATACTGCCATTTTCCTTTGAGCCTGAATGGTCGGCTCCATTtggaaagattaaaaaaaaaaaaaaaaaaagtcaaaatgaactGTAAGATAGGTGAAACAAAACATtgcttgtctttatttttatattttatataagccTTAATGTACAGCGTGTAAGCTGCTCTATTGTAAAGtacctttatattataaaatgcatttatctatatatttgaGTTGACTTTATTTGGTTCACAACGGTTTTTACCCCCATCTTACTTATCAGTTTTGGAGAGGTGAAAAGCGTTATACAACTAATTTACctttttcttcagtttctttctttttcttttttgtttttttaataacgttCAGAtaattttatttgctaaaaatgagCTATTGTTGCTTGTAACTTtgtacacatatttatatttaaataaaaccatttcaaataaTA

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0007520 myoblast fusion biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0039022 pronephric duct development biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0007420 brain development biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159835 lncRNA upstream 41545 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 220093 19731418 ~ 19735895 (+) True G108155
TU159770 lncRNA upstream 220754 19730739 ~ 19735234 (+) True G108154
TU159737 lncRNA upstream 266037 19689163 ~ 19689951 (+) True G108124
TU159632 lncRNA upstream 438514 19514981 ~ 19517474 (+) False G108058
TU159839 lncRNA downstream 1451 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA downstream 17650 20014813 ~ 20016629 (+) True G108217
TU159874 lncRNA downstream 144642 20141805 ~ 20142372 (+) True G108231
TU159884 lncRNA downstream 173606 20170769 ~ 20233185 (+) True G108240
XR_006252691.1 lncRNA downstream 211007 20208170 ~ 20208659 (+) False LOC122359185
XM_043258130.1 mRNA upstream 181612 19747592 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258127.1 mRNA upstream 181612 19752103 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258128.1 mRNA upstream 181612 19756571 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258129.1 mRNA upstream 181612 19756617 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258352.1 mRNA upstream 306282 19645509 ~ 19649706 (+) True gmnc
XM_043259928.1 mRNA downstream 30208 20027371 ~ 20074259 (+) True aplp1
XM_043259929.1 mRNA downstream 30208 20027371 ~ 20074259 (+) False aplp1
XM_043259936.1 mRNA downstream 77489 20074652 ~ 20086581 (+) False LOC122359578
XM_043259935.1 mRNA downstream 77489 20074652 ~ 20086581 (+) False LOC122359578
XM_043259934.1 mRNA downstream 77490 20074653 ~ 20086581 (+) False LOC122359578
TU159761 other upstream 181603 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 181603 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 530799 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 960028 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other upstream 960028 18993345 ~ 18995960 (+) False LOC122358990
TU159893 other downstream 186957 20184120 ~ 20186861 (+) False G108245
TU159895 other downstream 186957 20184120 ~ 20249972 (+) False G108245
TU159862 other downstream 191870 20189033 ~ 20191454 (+) False G108230
TU159863 other downstream 191870 20189033 ~ 20253742 (+) False G108230
TU159872 other downstream 191870 20189033 ~ 20254271 (+) True G108230

Expression Profile