RNA id: XM_043258915.1


Basic Information

Item Value
RNA id XM_043258915.1
length 2031
RNA type mRNA
GC content 0.46
exon number 8
gene id spint2
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11945085 ~ 11952127 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTGTTGTATTGTTTTACAGAAGTGCACCTGTTGCGTCCGCATACGCGAGCTATATAGATAAAGGCTCGTTTGCACAGGCGTGGCCGTAGAGTTCGTTAACGGTTTTCGATCCGACCGTCGGTCATAACCGAAAAGAGCCAAGACAGGTAAAAGAGGAAGTGAAAAATGGCTCAGGTGCGTTTTACTGCTTCCCTCCTGGGGTTTTTCTGTTGTCTGTCGGTTCTGAACGCGTGTAAGTGGGACCCGGACGCGGATCTCCAGCTGGATACCAGCTCGTTTGATAATGGCGCGGCTTACCTGGCTCACCTGCCCGAGATCACGGACGCGGAGCGGTGTCGGAGCGCGTGCTGCGAGAGAGACGACTGCCAGCTCGCTTTGATCGGGACTCCGGCGGACGACGGCAGCCCAGAGTGCTTCTTGGTTAGCTGCGTAAAAGATGGCAAAGACGTGTGCGTTTTGACCGAGAGCGTACAGTTTAAGGCGTATCGCAGGATCCTGGATAACGCCGATGAAGCGACCCAAAACGAGGCGGAAGTTCGCGCTGTGAACGGCACAGATCACTGCCGTCTCCCAAGTATGGTGGGAAATTGCCGTGCTGCCTTCCCACGTTTTTATTATGACGTCACCGATCAGACCTGTAAGCAGTTTATTTATGGCGGCTGCGGAGGCAACGACAACAACTTTAACTCCCAGGAGGAATGTCAGGCTTCCTGTAGTGGGGTGAAAGATGTGGAACCTCTTCTTAAAATGACATCAGATGAATTTCAAGCGAAGTGTCAGGCTCCCGTAAAGACCGGACGCTGCAGAGCCTCCATTAAACGCTTTTACTACAACAATGGCGTTTGTCAACCGTTCACCTTTGGAGGCTGTGGTGGAAACCAGAACAATTATGAAACTGAAGAATCCTGCATGACGACCTGCACAGTGAAGGTCATTCCTAGTTCTCCTAAGAGCTTTGAAGAAACCTGTGCTGCGCCATCCGACAGCGGCCCGTGCCGTGCAGCCTTCCAGATGTTTTACTTTGAGCCCAGCACTCAGTCTTGTAAGCGCTTCATCTTTGGAGGCTGCCAGGGAAACCTCAACCGCTACAGCACTGAGGAAGAGTGCATGGCTGCTTGCTCCGGGAAAGACGGCCGATTTGATGGACATGAAAGCCACACACGTAGCCGCTGGACTCCAGCCTTCTTCCTAGTGGCCACCCTGGCCATCATGTCTGCCCTGCTTCTGGTAGGTTTGATCCTGATCGCAGTGCGCAGAAACGCCCACAGGAGTCTCTTCATATTGGATGATAAGGAGGAGTTACTGCCTGCAGAGGAGCAGGTGTCTTATGAGAAACTGCCCAAAGACGACTCAGTCTAAAACCAGAGGCCTTTTAGTGTCTGGTCTGACGATCCATCTCACGACACTCCAACATTCAGCTGAATTGCTAAGTAACATTGAAGTTCCATGTTAAAAATGGTTTGTctcattattgtttaaattagaTATTCTACACCAGTTTTTAATCGTAAAATTGGGACGTGTTGCACTAAGATTTGGTGAGTTGGTTGAAATACTTCTGTCATCTGTCACTTTTTATGGTTATAATCCAGCATAGTAGAAGTAAATCAGCTTTCAGGGATGTATTTATTGTCacaagcataaaataaataaggaaGTGGTGTCccttttttttactgatatgtatgtatacattcataaataagaataattgattgattgagctgatttttaaagacttttaacGCTCATTTTTAGTGAGAGTGATACTGCGCTTAAGTCATTGCTAGGGTTCTTTGATTGTAAGCATATAAAAATGCAGTAGATAAGAGAAAATACAACATACcttaacagaaaatgttttatatatgtatgaaaatatattatccTGTAGTAGCAACTGCAGACTTTTTGACGTACCAATGAATGACCTGTAACTGTGACCTATAATTGTTTAATGCATATAAggctgtattttaaaaaaacactcttaTTTTAAAGTCTTCAATAATAAAGGACATTTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156322 lncRNA upstream 41256 11901351 ~ 11903829 (+) True G105819
TU156198 lncRNA upstream 182396 11762395 ~ 11762689 (+) True G105739
TU156192 lncRNA upstream 189566 11753527 ~ 11755519 (+) True G105736
TU156177 lncRNA upstream 215935 11726547 ~ 11729150 (+) True G105730
TU156043 lncRNA upstream 388787 11555878 ~ 11556298 (+) True G105650
TU156363 lncRNA downstream 75468 12027595 ~ 12030475 (+) False LOC122358755
TU156376 lncRNA downstream 118172 12070299 ~ 12070863 (+) True G105860
TU156393 lncRNA downstream 139727 12091854 ~ 12093153 (+) True G105870
TU156396 lncRNA downstream 144777 12096904 ~ 12097497 (+) False tnfaip1
TU156397 lncRNA downstream 144777 12096904 ~ 12097646 (+) False tnfaip1
XM_043259247.1 mRNA upstream 102461 11837084 ~ 11842624 (+) False zgc:112083
XM_043259246.1 mRNA upstream 102461 11837087 ~ 11842624 (+) True zgc:112083
XM_043258202.1 mRNA upstream 109210 11828699 ~ 11835875 (+) True map6b
XM_043258203.1 mRNA upstream 110533 11828691 ~ 11834552 (+) False map6b
XM_043259889.1 mRNA upstream 117992 11822083 ~ 11827093 (+) True thap12b
XM_043258779.1 mRNA downstream 13296 11965423 ~ 12001560 (+) True plekhg2
XM_043258781.1 mRNA downstream 23370 11975497 ~ 12001560 (+) False plekhg2
XM_043258780.1 mRNA downstream 24172 11976299 ~ 12001560 (+) False plekhg2
XM_043258784.1 mRNA downstream 49570 12001697 ~ 12009631 (+) True il15l
XM_043258785.1 mRNA downstream 49585 12001712 ~ 12009631 (+) False il15l
unassigned_transcript_2151 other upstream 124453 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 573158 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1216690 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1554485 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1737633 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 890050 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 890050 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 890050 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1964446 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2964378 14916505 ~ 14916883 (+) False tbx4

Expression Profile