RNA id: XM_043258984.1


Basic Information

Item Value
RNA id XM_043258984.1
length 4111
RNA type mRNA
GC content 0.49
exon number 13
gene id snx19b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10353161 ~ 10390600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACTGAATATCTCTGAGGCGGAGAGGACGAGGAAGAAGCTGTCAAAACACTGCGAGGCCGTTTGAGTCGGCTTTTAAACATGAATCGGTTGTGGTCTAAATTTGCTCTTCACACTCATTACATATGCCGTTAAGGAGGAATCTCAGTAAATCTCGGCAATGTCTCATCCAGAGCATCTCAATGCGAACCCCTGGGGCTTGTCTGAGGTTCTGGTCCAGAGGAAGCTGCTTGGTTTTGGGGTGCTGCTGGCCTGGATGGTCTTGTTCCACCTGCTGGTTAACGTTTGGCTCCTCTGTGTCTTCACAAGCCTCTTAGTGGTTTTAGGTGGTTGGCTCGGTTCCCAGGCTGTCCTGGACTCGGACAGCGTCGTTCACCTAGAGCGCTTTGTTAGGCTGGAAGAGATCTTGCGTAGCGCTGAGAGCGAGCAACAACTGGAAGATGAGATCCAGAAGACAGTCGGCAAAATCATACGTGACTTTGTCACTTCGTGGTACAGCACCATTTCCAAAGAAAAAGAGTTTGAGGATGAGGTGCACAATGCTATGATCGCCATGGCACTGGAGCTGAAGGGTCGAGCGGCAAACGTGGACAGGAAAGCTTTATCTCAGAGGGTTTTAGACCTGTCTGGATGCCACCTTCAGTGTTTTCTGAGTGCCAAGGAAGCCATTAAACATCAAGAGGTGGGCAAAGATGAAGATCTCTGGGAGGCGTACAGCAAAATCTGCCCTCCTCATCCCGCTCTTCAGAGCTCTGCTGTCGAAGTGAATTACGTGCGGGCCTTTGTAGATCTGCTTCTCCATGTTCTTGTACCTCCTCCACATTTAGAAACCCGAACAGGTCGATTTGTGGTGGGCGAACTTATAACGTGCAACGTTCTGCTGCCTTTAATCGCAAAACTGTCCGATCCAGACTGGCTAAACTTGTTGATTGTCAGCATCTTTAGTCAATCCAGTGAACCAGCCTCAGAACCAGACCCAGTAGAAGTTCAGGCTCCACCACAAGTTGGATCTCCTCAAGAAAACATGCCTCCAGAGCTGGAAATTCCTTGCGTTCTGACCCTAAAAGTCACCCCAGAGACCCCTTCAGCAATGGAGGCCCCAACACCAGAACTCGCAGCTTATGATGTCATTGACTCTGCTGATCTTTATTCTCCACACAACCTGGAAGACGACGAAACACGGTCGACCAAACCGTTCCCGCTGGGTTTTAGCCCCAGGGATTATCTGAGACTCGGCAAGCCCAATCCATTCTATCAAGAAACCGACTCCGATTTGGAATCTCCTCTAACGGATTTCAAGCGGGGCTCTCTAGAATCGCTGGTTCTGATTGGTTCAGAGGAGACGCTTTCTGAAAGACTAGCCGAATGCATCACTCCAGTTGATGCTGTGTTAGACCTCGACGATGAAGTTCCAACTTACACCAGTACGACAGAGAAGGAGCTATCGGTACATTCCACCGAGGAAGAGCCATCGAGCTTTTGCACCCTCCAGCCGTTGGAGAAGAGTAACTCGAGCGCAGACCAGCCAGGTCTGCTGAACCCCGGTGAGCTGGCTTTGACTGCGCCCGCCCTGGCTTCTTCACCCGCTGGGATGGCATCCCTGGTACCTTTCAACTTTGAGCCCCTCAGCAGCCCAGAGGGTCCGGTCATTATCCAGAACCTCCGCATCACTGGCACCATCACCGCCAAGGAGCACAGAGGCACTGGCTCACATCCCTACACTCTCTACACTGTAAAGTATGAGACAGCCATGGACTCTGAGAATCCTGAATCTTTGCAGCCCATGGCCTACCACACCGTCAACCGACGCTACAGCGAATTCCTCAACCTCCAGACGCGCTTGGAGGAGAAACCAGAATTACGCAAGATTCTTAAAAATGTGAAAGGACCAAAGAAAATATTTCCTGAGCTTCCATTTGGAAACATGGACAGTGACAAAGTCGAGGCCAGGAAAGGCCTTTTGGAAACATTCCTTAGGCAACTTTGCGCTATTCCTGAAACGGCCAACAGTGAGGAAATGCAAGAATTTCTTGCTTTAAACACTGATGCGAGAATCGCCTTTGTGAAGAAACCCTTCATAGTTTCACGCATAGACAAGATTGTGGTGAATGCTATAGTGGACACCCTGAAGACGGCCTTCCCTCGCTCAGAACCACAGAGTCCCACTGAGGACATTGACGCAGAGCCTGATGGGAGACTGTCCACTGACAAGAAATCCAAGTCTCGAATGAGGTTCTCTAGTAAGATTGCTCCTGCTCTCAACGTGTCTGACATGAAACCCAACGTGCTGTACAGCTGTGATGAAAGCAGCTCTGTTTTCAACGGCTTCTCGTTGAATGAGCTGGAGAGCTTCATCTTAGACAAGGAGCGTTTTGAGGCTAAAGCGGGTGATGCTGATGCAGAGAGAAGTGGAGGACCTAAATGGGATGTGAAAACATGCCCATGTGCCCAGAATGCACCCGCCTTCGGTGACTCTGCTAGTGAGATGGCTCTGTCTGACCAGGCCCTGAATATCCTGTGTGTGCTCATGAAGGATCAGTGGAGCTGGCTCTGCACAGAGAACACCCAGAGGACCATCAGACTGCTGTTTGGGACCCTCATTGAAAGGTGGCTGGAGGTGGGTGTTGTTAACCTGACCTGTACGCAGTACTGGGTGATTTATCTGCGGGTGCTGCAGGAGGCCATCTGGCCTGGAGGATGTCTCCCGGCTCAACCCAGACCCCAGCGCAGCCAGCAGCAGAAAGACGAGAGCAGAAGACAGGCTCTGCAGTGCCTTATGAAACTGCTGCCAGATCTGATCTGTGACGTGCTGGGCTCTGAGAAGTACAAGATATCTTGGCAGACGGTTGTGGATTCTTTTCAGGACCCCACAATAAACAGgcATCTCGTGTACTGCATCTGGGATCTGCTAATCGAGTTTCTCGTCCCCGAGGCGTCTGATGGGGACTTTCAGAAAACACTTCTGCACAGCCTGTCCAAAAACGCAGAGAAGCTGCCACCATAGGAAAACCCAAGATCCTCACAACTGTCCCCCAACTCAGACTTGTATGTGCTTGCTGAACGACGGCTACTGGAACCTCAGAAGAGCGACGCTAAACCGTAATCCCTGTTATTCTTGCAGttcatataaatcttttttgtttttctcctttttgctGTCCTGAGGTCGGTTTgccctctcttttctcttcttttaacACCTCGACCAACATCTGCACAGCTAAACGAATGCTCGGCTTTCACGATGATGCATTCACTTTTAACCAGAACCACGCTGAACTTGCGTTGCTTTAAGAAATACGAAGGCGTCTGATAGTAGAGGAGTGTTATGAGAGTAGGGAGACGGGTCTGGGACAGCGTGTCCCTAAATGACTGCGCTCTTCAGGTCAACATGTCTCCGTTTAACACAGTTTAAAGGGGCTGTGATCACGCTTGGGTAGATCTTTTGGACGGCCGCTGTCTGTACCGTGCTTTACATTGGCGCGTGATCAAAGGCTGAACCTGTTTCGACCTTCTGTGTTTCAGGGGACATTTACATAGCAGCATTTACAAGCAGATTGAGAGCAGAATTAGCTATTATCTGCTGAGGGGCTTTCAGGGGCGATCCAGGATACAGACGCTGTGTTCTGTGTTGCTCTTCCTGCTTTGAATTTCAGCAGAGCCTTTGGTGGTCTCTGTGTAGTAACAAAACAACGCTTTCCCGTTACAAGAAACCATATAGATGGTATCAGTGGGAACACACGGACAATAACGCCTTAGTTTGATGGAGAAATTGCAGATTAACTCTATCACGTGCCTTACTGAACGTTTCGCCGcaatttcaaagagaaatgtttacacaggttcaatatgcgAAGCGCTAATTTTTATTACGTCGATACAGGTACATATTGCTgcgtttttattgtgttaaacaTCCAGGGACTGTAAACAGAAGTAAACAGAAGCATGTTTTGAGTCAAAAACAAGGTCACTTTAACATGCTTTGCAAATACTTTGTTCATGGCATAATTATGTTAATCTGATATCTGAAGATAATATCAGAAGCACgtacagacctggacaaaaatgatggtaccccctaacttaatattttgttgcgcaacctttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155630 lncRNA upstream 15715 10336766 ~ 10337446 (+) True G105395
TU155631 lncRNA upstream 15763 10336766 ~ 10337398 (+) False G105395
TU155632 lncRNA upstream 15828 10336766 ~ 10337333 (+) False G105395
TU155406 lncRNA upstream 174935 10177872 ~ 10178226 (+) True G105242
XR_006252623.1 lncRNA upstream 175333 10172957 ~ 10177828 (+) False LOC122358545
TU155661 lncRNA downstream 1252 10387483 ~ 10387744 (+) True G105411
TU155663 lncRNA downstream 5228 10391459 ~ 10391718 (+) True G105413
TU155666 lncRNA downstream 18788 10405019 ~ 10405333 (+) True G105416
TU155732 lncRNA downstream 77971 10464202 ~ 10464899 (+) True G105458
TU155745 lncRNA downstream 120760 10506991 ~ 10507793 (+) True G105469
XM_043259641.1 mRNA upstream 2855 10343436 ~ 10350306 (+) True rps6kb1b
XM_043259927.1 mRNA upstream 16749 10325905 ~ 10336412 (+) True vmp1
XM_043259923.1 mRNA upstream 27741 10300340 ~ 10325420 (+) True cltcb
XM_043259009.1 mRNA downstream 45334 10431565 ~ 10441298 (+) True LOC122358985
XM_043259256.1 mRNA downstream 135462 10521693 ~ 10539063 (+) True LOC122359095
XM_043258495.1 mRNA downstream 158496 10544727 ~ 10558178 (+) True LOC122358614
XM_043259255.1 mRNA downstream 178258 10564489 ~ 10580681 (+) True LOC122359094
XM_043259270.1 mRNA downstream 277579 10663810 ~ 10672600 (+) True dixdc1a
TU155413 other upstream 145709 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 242720 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 679816 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 729189 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 778218 9574855 ~ 9574943 (+) True trnar-ucu_52
TU155825 other downstream 335741 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 984405 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1434330 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 2455946 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 2455946 12842177 ~ 12847378 (+) False spa17

Expression Profile