RNA id: XM_043259076.1


Basic Information

Item Value
RNA id XM_043259076.1
length 2580
RNA type mRNA
GC content 0.46
exon number 2
gene id omgb
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16809237 ~ 16816847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTAGGGGGAAACAGGTGGGAGCCAAATGGAGCATGACAGACCACTGTAATCTATAGATACATAGCTACATGGATATAAAGACTTGAAACATTAATCAATCCTTATAATATACTCaaaactaactaaactaaattaacaagatgaatgaattaatgtaaGAACTTACTCAAAGACCAATACCGAAAACCCTAAAGAAAGGCATTAAAGCGCAAATCAACAAAATAGCTGTCTCTTAAATGAGGACATGACCATAGAGGCACATTAAACCACGTCGCCCTGTCTTCTGCACTTAGCTGCGTCACACACAGATTAATTCAGGACCTAATGGTACCGTCGCAATGGAGCCTGGGTTCATTTATCAAAGCATTGGGCTGTGTGAGTAATGGGATTTCTAAATATGGCATGTACACAGACCATGACACGTTACAGGAGAACAAAACGTgtgagagagattgagagagaaaaatcagGGAGATGATTTGGTGGCGTGTGCAGATCCGGAATATAAAACACTGAAGTCAGCACCCACCCCCCCCCACCTCATCAGCAGCAGTATGGGTCGACTCTGTGCTGCATTTTGCCACCTCCCCCTCCCCACCATTCGACAACCCTTCTCCCtcctttcgctctctctctctctctacctcctCTCACAGACATCCCTGAATCAGGCGGGCAGCTAGCAGCAGCAGAGGCTATCCAGGGCTGCAAACTCTCTGCATGAACATGCCTGGAACAAATGAAAGGCAGGGAAACGGCTAAGAGAGACTCTAAACCAAAGTAACTCTCGGCTGCCAATGAGAGGAAAAGGAGGGTGTGGGTAGAAGAGGGGAAGCAAGAGCGAAAGGGGACAGGAGCATGAGACAGTGAAGACTAAACGTGGACCCTGCTGTCATACAAGACTGGGAAAACATAAAGACACCAAGCAATCAAAGCCACCTTCTGCTGCTCTAGAAAAAGGGGGAGCAGGAAAGAGAGGTCAGAACGGACAACGACATGTTCAGAAAGTAATGGAAGGGATCAGACCAACCCACGCCACACCTGCCTCCATGCCGACTAACCTGTTGCTCCTTCTTCTGTTCGGGGTGCGTGTGATGGCCATCTGCCCACCAATGTGCACCTGTAGCAGAGGCCATAGAGCTGTGGACTGCTCTGCACGAGGGTTGGCTATACTTCCAGACAGCCTGCAGCACAACATTCATTTTCTCAACCTGTCACATAACCGCCTCCAAGATCTTGATGGACTCCTCAACCATTTTGACCATTTAAGAACTCTGGACATCTCATACAACCATCTGCACCACCTTCCTGTTGGTTTGCCAAGAGCACTTTGGGATATACGTGCCTCTGGAAACTACATCCGTCAACTGGAGAAGAACGACACGGTCTACCACTGGAACCTTCAGAATTTGGACTTGTCACACAACTTGCTGGAACGAGTGGTCTTAATTAACAACACATTGTCAAACCTCCAATCTCTCAACCTTAGCCATAACAAATTTTGGACTGTGCCAACAAACATGCCCCATAATTTGGAGATGGTGGACCTCTCTCACAACTACTTGCTGCAGATCTTGCCTGGCTCACTGGAACGCCTACCCAAACTGTCGAGATTCTACCTGCATGCTAATCGTTTTACCTCACTGAGCGAGGGTGTCTTCGATCAACTTGATGGACTGCAGCTCCTCACACTTGGAGACAATCCTTGGGCTTGTGAGGATGAGGAGAATATAAACCATCTGCTGACCTGGATGCAACAGACTCCTGCAAAGATCTTAGGCTGTCCCTGCTACACAAGACCCACATGTGGAGAAGCCCACCTGGCCACTAGAAGAACCTGGCACTCGGCTGCATTCACAGAGCCGCCCCTGGGTGCTGACGCTCGTCATCCTGGCCATCGAGCGCCAATGCAGGTAGTTACATCTGGGTACCTGTCCAAGTCAGCCCAGTTGAATGTGGGTCAATATCCAAGCGCTGTTAATACCTCTGGGCCAGGTGAGCAGGTACTGGTCATGGGTGGGGGATTTTTCACATCAACTCCACATAGCCTGTCCACACAGTCAAGCACAACAATCCGAACACGTAGCACCAAGAAAGTCCTTCCAGGCAGAGCTCGCAGCACAAGCCATCAAATCCACATATGCAGCTTTGAAACCACCATTTTGAGCTTTTTATGTACAGTTGTCATCCTTAGTGCTTGGTAATTCTGCATAACATCTCTTGTACTAGATCTGCTGCCTTGattcaggaaaacaaaaaaaatccacaaagaATGCAAAAGGAGAGACTTACCTCTTAGGTTTCCATTGTCACAGCGTTCTGGCTACCTTCTTTAGCATTTTTCAACATATGCAATCTCTGCCTGCTTACAATAAACTTAGCACCTTCTACATAATGTGACTGAGTATTGTATGGCTTACACATACCAACATCTAGACATGTGTACAAGTACACCACAATTAGCAGTTTCTTAATGTGGAAAATTGAATGTGCTTTCCAGTGTAATGCTTGAGCACTGACAGATTTGTGCATTTCattgtttatattatgtattaaaagaaacacttaaagtgTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158446 lncRNA upstream 21563 16783630 ~ 16787674 (+) True LOC122359009
XR_006252675.1 lncRNA upstream 22231 16783079 ~ 16787006 (+) False LOC122359009
XR_006252654.1 lncRNA upstream 230581 16529280 ~ 16578656 (+) True LOC122358872
TU158428 lncRNA upstream 248514 16529280 ~ 16560723 (+) False LOC122358872
TU158393 lncRNA upstream 464582 16344382 ~ 16344655 (+) True G107232
TU158488 lncRNA downstream 45371 16858235 ~ 16859096 (+) True G107305
TU158491 lncRNA downstream 46840 16859704 ~ 16860627 (+) True G107307
TU158492 lncRNA downstream 47906 16860770 ~ 16860988 (+) True G107308
TU158493 lncRNA downstream 48323 16861187 ~ 16861477 (+) True G107309
TU158445 lncRNA downstream 67793 16880657 ~ 16882321 (+) True G107272
XM_043259075.1 mRNA upstream 1546 16805424 ~ 16807691 (+) True LOC122359007
XM_043258253.1 mRNA upstream 281076 16525725 ~ 16528161 (+) False mrps23
XM_043258252.1 mRNA upstream 281076 16525726 ~ 16528161 (+) True mrps23
XM_043258237.1 mRNA upstream 283579 16514348 ~ 16525658 (+) True nos2b
XM_043259338.1 mRNA downstream 145295 16958159 ~ 16959238 (+) True LOC122359144
XM_043258166.1 mRNA downstream 153569 16966433 ~ 16967368 (+) True LOC122358372
XM_043258176.1 mRNA downstream 178931 16991795 ~ 17017279 (+) True LOC122358381
XM_043259156.1 mRNA downstream 214015 17026879 ~ 17028715 (+) True LOC122359040
XM_043259155.1 mRNA downstream 218209 17031073 ~ 17037925 (+) False LOC122359039
TU158422 other upstream 295077 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 572896 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 765972 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 765972 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 925727 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 1019208 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 1047047 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 1232153 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 1232153 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1943479 18756343 ~ 18758836 (+) True G107756

Expression Profile