RNA id: XM_043259169.1


Basic Information

Item Value
RNA id XM_043259169.1
length 5848
RNA type mRNA
GC content 0.52
exon number 41
gene id arhgef12a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12903006 ~ 12942649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTTTCCACAGTGCATCTTCGCGAATAAATAAACTCCGAATAACCGTCTTCACTCCGAACCGTAACCAAACCAAATTCCAGTGAGCCCTTCTACCTAGACTGCATTTTTCGTGCGCTCGTTGAGTGAGTTCAGCAGAGCGGGCTGGCGTGAACCGGGTTGTATCGGAAATGCCGTCCGTGCAGGCGGCACGCTAGCTTTTGAGACGCGGCACATCTCAACTTTCCCCAGCCCGATGGACCGGAACCTACAACCTCCAAACTGATTTGACCGCGGACCCTCGCCTCCACGCGAGCTCGGCATCgtacgaaaaaaaaaacgcccCGGGTGGGGAGCTACGCGAACTTTGTCGAccggttttgtttattttgatgctGAAGCGATTCCGTCGCCGCTCCATGGAAACTCTCCGCGCGGTGACACGTGTATGAGCGCGTGCGGGTTTTCCCCCTGTCTGGGTGACCGCGGGATCGGTTCGGATACGCGCGGTTGTTTATTGCTGTTGTTGGGAAAATATCGCGTCCCGTTTTTTGGGGTGGACGTTGTTGGGCTGCTGTTAGCTTTAGCATAGCAAGGCCTCGTCTGCAGTCCGGGTTTGCGGTATCGCTGCTGTGCTGGCTGTGGACGTACGCACGCATTCGAGCTCTGGGAAGCTCAAAAGTGTCTTAATTGTCAAAGGAGAGCAACTTCGAGCAGTGGGGAGCGTTTCGTCTTCACCTGGGAGCTGCTGCTGAACATGAAGtGAACCTCCTGGTCAGTACAACAGAATACGGATGCAACAGCCTCAGAAACTGATGTCTCTCCTGATGCATCTGAAAATGACTAAAGGATATAGGAcgaataaaagctaaaaacaaagcccaatgAGCGACACACGGTCACCAGTCACTGACAGAACCAGTAGCATTCTCACCAGAGACCACCCTCCTGACAAGAGACTCCAAAGCGATAAGCAGCCTGGTACCCCTACACACGAGTTTGACCCTACAGACGTGCTGGTGCAGAAGATTGGATTTGTAGTGGCTGACAGGAGACCTGAGTCTTGTGGGCTGGTTCAGAGATGCGTGATCATTCAGAAAGATGAGAACGGCTTTGGGCTGACCGTCAGCGGGGACAACCCTGTTTTCGTGCAGCTCGTCAAGCAGGATGGCGCTGCAATGCGTGCAGGTGTTCAGACGGGGGACAGGATCATTAAGGTGAACGGGACATTGGTAACGCAATCAAACCATGTCGAAGTGGTAAAACTAATCAAATCTGGCTCATATGTGGCCCTCACAGTATTAGGCCGGCCACCCGGGTTGCCCCAGATCCCCCTCTCTGAGGTAGACGTGGGTCTTGGGTCACCGGGGGGTTATGGAGACCCTTTTGTTACATCTCCCAACTCTTACAATGCAGCGGAACGCACCTCCTCTCCTCTGATTTCATGGGAAGAAAACAGTGCTCCGCTCAACCAAAGAATGGACAACAGGAGGATGGTGTCCAAAGAGCAACATGACATACAgGGACTGAAGGAGGACTACTGCAGAACTCCTACACCCAAACCACTACGGGATATCCAGGAAGCCAAGAAGCACATTCCACATCAGCAGGGCCAGCTTAACAGGGCAACACATGAGAGTCTGTGTCTCAGGAACAGTGAAGATGGCTGTTGGGTGGATGAGGATCAATATAAGGGAGATTTCAACCCAGAGGGTTTCTGGAGTGGAAGTTCATTATCATCTGTACAACGCCGGTTCTACCCAGCCTCTCCAGAGAGCCAAAGGGAATCCAACTGTTCCAGTCCGAAGAGCACCCCTAGAGACAGTTTCCACTCCTGCCCCTCCCCTGAGGTCGAGGACGGCTCCGACCTGGATTCCCGTTTCTCATCCACCATAGGGAGTCCACCCTCCCGCCTGGCTTCTGAGATCATTGCGGCTGAAGATGATGACTTTGACACAGAGCAGGAGCAGGTGAATGGACAGTGCAGCTGCTTCCAGAATATCGAGCTGCTCAAGACTCGACCCGGTCATCTTGCTGCCTTTCTGCATCATGTGATCTCTCAGTTTGATCCTGCACCACTGCTCTGCTACCTGTACGCTGACctctacaaacaaaccaactcCAAAGAAACACGACAGATCTTCATGCACTTCTTGACGATCTTCATAGACCGGGGGGCAAATTTGAAAGTCGCTGTGCCTGAATCCATCTCCTCTGAGCTCGAGCGGCGGAGACCCGAGCTGATTCCAGAGGAATTATACAGGCAATATATACAGACAATACAGGAAGCTCTCCTTCCAGATGTACAGAGAAACTTGGAAGACTTCAGGCAGAAGCGCAGTATGGGCCTGACCCTGGCTGATGTAGAGCTGTCTCGTCTGGACTCTGAACAGCTGGCTCTAGAGAGGGAGAGATCATGCGCTGAAAACATTCTCTCCAAGATAGATGACATTCTGTTGACTTCACAACCCACGGAGGAGGAGAAATGcaaCACCATACAGTATGTGATCTTTATGTACATGAAGCATCTGGGAGTTCGGGTGAAAGAGCAACGAAACCTGGAGTCCAAACGAGTtcgaatcattttttttccttccaaaCTAAGGaaaagcaaaacagaaaaggAAGGGGAGGAGAAACTGAAAAGGCCTTTTTTTCCCATCCGGGTGCCCCCGCGGTGGCCCAGTCGCGGCGATTCAGTACCATCTGGGAGGGCCGGGGACAGCATCAAGCATCGGCCTCAGAAGCAGATGTCTCAGCCAGCTTTGGGTGGGTCGGAGTTTATCGAGGGTGGACGTCTGCGGGGCAGTCAGTCGAGTGAGGGCTCAGACCTCCTACAGAGCCCCAGTTTGATCACGTCTCCCCTCTTCAGCGCCTCTTACGGCTCGCCATCAGACCCCTTGGGCAGAGACCCGGAGTTTAGTATGAGCCCATCTGCGGTGGTTCCCCGGCTCAGTGACGGGCTGCAGTCTGGAGAAATGCTGGACAGCATCTACCCACCCTGTGACTACATCCCCTACAACACGGACCAGCTAGATGAAGATGGAGAAAGACTCCTTGATGGGGGCACCCCTAAACTGAGTAGAAGGTTTGAAGAGCTGCAGAGTGAGGATGATCAGGGGAGTGATGTTTACTCTGATGTAGATCCTCCAAACTGGCAGCAGCTGGTCGGGCGTGATGTTTTAGCAGGCCTGACGCCCCACGAGATCAAGAGACAAGAAGTCATTAATGAACTGTTCTACACGGAGAGAGCCCACGTACGCATGCTGAAGGTCCTAGACCGCGTCTTCTACCAGAAGCTCACCCGAGACAACATACTGCCCCCTGCTGACATCAAGAACATATTcaccaacctggaggaaatcgTCCAGTTGCACATGAGGATAGCAGATCAAATGACAGCGATACGCAAGAAGAATGAGTCGTCGGTCATCGACCACATAGGAGACGAGTTGCTGTCTTGGTTCAGTtgtggagaggaggagaagatcAAGCAAGCAGTGGGCACTTTCTGCAGTAACCAGCCCTTCGCCCTGGAGCTCATCAAGTCCCGGCAGAAGAAGGACCAGCGCTTCACCTCCTTCATGCAGGAAGCTGAAAGCAATCGACTGTGTCGACGATTACAGCTAAAGGACATCATCCCTGCAGAGATGCAGAGGTTCACTAAGTACCCTTTACTGTTGGACAACATTGCCAAGTACACAGATGAGTCAGAGGAGAAAGACAAAGTGAGACGAGCAGCCGAATGCTGTCGACACATTCTCAGCCACGTCAACCAGTCCGTGAAGGAGTCAGAGAATAAACAGAGACTGGAGGACTACCAGAGACGGCTGGACCTCTCTTCCCTCAAGCAGAGCGAGAACCCTATGATCTCGGAGTTCAAGAATCTGGATCTCACGAAAAGGAAGATGGTTCACGAGGGTCCTCTCTCCTGGAAGATTAACAAAGACAAAACTATTGAGCTGTATACTTTACTCCTGGAAGACATCCTGGTGTTGTTGCAGAAACAGGATGAGCGTTTCATTCTCAGGTGTCACAGCAAGAACCTCGCGGGAACGGCCGACACGAAACACATATTCAGTCCCATCATCAAACTCAGCACTGTGCTGGTGCGCTCGGTGGCGACAGATAACAGATCGTTCTTTGTGATCTCCATGTCCAAAAACGGAGCTCAGATTTATGAGCTGATGGCACAAACAGTGTCTGAGCAGAGAATGTGGCAACGGCAGATTGCTCAGAGGGCAGATGTTATGAACGCCAAACCCCACAGCGTCATTCCTTTGCCCCAGCACGATGGTGACAGAGACGGTGTCGAGTTAAGCAAGTTCAGCAAAGGCTCTGAACGGATCTCCACAGGAAGCATGCAGTCCGCAGAGAAAGACAGCGAATTTTCACCCGCGACAGCCCTGCGGAATTGCGTCCCTGACACCAACCCTGGGGAAGAGGACCAGGTCCCGAGAGCTGGCAGGGATGGCTCGTACCTGGACTCTGAACTCTTGAACGGCAGGGACGCTGACTCTCAATCGTGTTCGTCTAAAGCAGATGAGGCTCTCAAAACCTTGGCGGCACTGAAGCAGGTGTTGGTGACTCAGCTGATGGCTCAGGATGAGGGCGAGAGATTGTGCCGATCGGCCGGCAGTCGTCTCCTCAGGACCACCTCTCTACGCACACCGGTGGAGCACAGCTCCACTCGCACCCCCAGTCGAGCTCAGGACTACACCTCTGGAGATACGGGCTTCTACGAGTGCCCAGAGGACTACGCAGCTTACCTGGTCCTGGAGGGGTACGGTGGCCCAGGAGAGAGCAGTACGGATGATGATATTCAGGTCCGGAGAAAGGAGTCGAGTTTGGCTCACAGCTGTGCTGCTGACTCGGGCATCAGCCTCAAATTCTCCTCGCCTTCCTCAGGCAGCACGTCCCGCCTCAGCAGACAGGTCCTCTCACATCTACGCTGCTTGCAGGCCAACCTCAACCACCTCAAGGAGATGGAAACCAAGTATTATAATCTACTTCGCCAAAGGCCTGTTGGGTCAGCCGTAGATACGGACGAGAGCAGAGATAAGAAATAGAGTGGCAGAAGTTCCCGGCTCCTGTGATGACGGGGGCATCGCTTCTATCCGTAACATGCTCCGCACAAGCCTGTCTTCCTCACTGCTGAACACCTCCATCCAAAAAATGAGGGGAATATTCTAACAAGGCCTCTCGCTTCTGTCAGCACTCGTCAATTAGGGAAGACGGACTGTCTCCTCTCAGCCTTACCTGTCCCGATGTCCTCATTCCTACGAACGTGGGCAGCCCAGTCTCTTCTCCTTCCCCGGCAGCCCTAGCTAGAGAAAGGAGAACTACACCAAAATGTACAAAGCTGTGTGTTTAGAAAATATCTAAGTCGagagaggattttttttaaactaataatgtATTAagccgttttcttttttttaaatcccaagatgtatttatttttccttttagtgTTTTCCATGTTTCTCGCATGCTTCTGGCTGTTGAAACTCTTAAGCTGTCTGTCGCTGTAGGCTCCAGTTTGACTGAACAGGGCGAGCGCTCCAGAATTCAGACTCTCTTCTCccccacaattttttttttacgcgtGGAAGCCCAAGTCTGTGCAGTACATAAAGAGAAGTTTTTGCTCAAGGCCTCCCTCAGTAACTTCAGCCGGCTGACATTCCTCCTAGAGCCCTGGACTGAATCATTCACCCCTGAGACCCTCCTGCTGAGATGAAGAGTGGATGGAGCTCGGGCTCTCTTGGTCTGCAGCTACATTTTGATGACTGCAAAAAGAGAAGATTGGCCATCAGGATTGAAGGTGATGCAAAACCTGGAAATAAAGATGCAATGACAAAACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156915 lncRNA upstream 54347 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 54600 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 122639 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 130944 12771795 ~ 12772070 (+) True G106171
TU156845 lncRNA upstream 161937 12738051 ~ 12741077 (+) False G106161
XR_006252599.1 lncRNA downstream 2428 12945077 ~ 12955807 (+) True LOC122358384
TU156962 lncRNA downstream 315587 13258236 ~ 13798248 (+) True G106234
TU157016 lncRNA downstream 392659 13335308 ~ 13336677 (+) True G106276
TU157129 lncRNA downstream 737531 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 749730 13692379 ~ 13692893 (+) True G106354
XM_043258193.1 mRNA upstream 554 12898047 ~ 12902460 (+) False tlcd5a
XM_043258194.1 mRNA upstream 554 12898047 ~ 12902460 (+) False tlcd5a
XM_043258195.1 mRNA upstream 554 12898980 ~ 12902460 (+) True tlcd5a
XM_043259754.1 mRNA upstream 6033 12883017 ~ 12896981 (+) True oafa
XM_043258326.1 mRNA upstream 34361 12861778 ~ 12868653 (+) False pde9ac
XM_043259848.1 mRNA downstream 14448 12957097 ~ 13219219 (+) True grik4
XM_043259849.1 mRNA downstream 14448 12957097 ~ 13219219 (+) False grik4
XM_043259891.1 mRNA downstream 283854 13226503 ~ 13251217 (+) False cbl
XM_043259890.1 mRNA downstream 283856 13226505 ~ 13251217 (+) True cbl
XM_043259334.1 mRNA downstream 344630 13287279 ~ 13291108 (+) True rnf26
TU156910 other upstream 55636 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 55636 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 55636 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1082382 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1531087 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 973924 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 1973856 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 1978486 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2763864 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2763864 15706513 ~ 15710209 (+) False G106937

Expression Profile