RNA id: XM_043259183.1


Basic Information

Item Value
RNA id XM_043259183.1
length 3044
RNA type mRNA
GC content 0.46
exon number 8
gene id spartb
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18270036 ~ 18283210 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCTTTAAAATCGTCTTTATCGGATCACGTAACAACACGCACGAGTCGAGCAGCAGCTCAGCTGTCAGGGAGCTGAAGCTGTTCAATCAGCAAACCCGGAATAACGCGGAACGCTCGTTAAACTTcacaattcatttcatttatccCATCTCCTGttatggAGCATGCAAAGCAGGAGGCCTTTGATAACGCCAGGTTGCAGGTGATCAAAGATGGGTACGAAAAGGCATTTGCATGCATCAATAAAGCTCTCACGGAGGACGAAGCGGGCCACAATGCAGAGGCTCTGAAACTGTACCGACAAGGACGGCAGCACCTCCTCAGGGCTCTCAGTGTTCCCTCACAGGGTATGGAGTGTGTGGGCACTTCCTGGGAATCGGCTAGACAGATGCAGCGCAAGATGCAGGAGACTCTCAACAACATCACCACTCGCTTGGCCATCCTGGAAACCAGCCCAGACGGAGCGTCGGATGGCAGCGCAGCTCCTCAGAAACTCTACCCTGAAGTCCCGAAGGTCAAGCCCGAGAGGCCCGCTCCACCACAGACGCTTGCTTCCAACGGCGGGGTAGCAGGGGCTTCGGGTGGGCCGGTTCCGGTGTCTCCCTCAGCGCAGCCCAATATGTTAAGTGACCAGCCTCCCGCATACACCCCTCAAGCCGCTGACGGACACCTGACCATTTCCTATGGCACCGACTCAGGCGAACTCTCTCTGGTCGGAGATGAGTTCTACAGCAACACGTCTAATTCTGCACCTTCTCCTCAGAGTCTGGGGGAGGACGGAGAGGAACTCTTTTTCCTTCCTCAAGGGGTGCAGATCTTCTTCGTTACGCCTGAGGGCCAAGTCAGCGCTCCCTCTTATCCAGGGTACCTTCGTATTGTAAAGTTCACCAGCGAGCGATCAGAAAGGATTCCAAACAGGCCACCTGCTTTCCTACAGGTTTGTGACTGGCTTTACCCCTTGATGGCCTCCGACTCCCCAGTCCTGCTGTGCAACACGGGGGTCTACATGTTCCCTGACATGATGGCTCCCACCCCAGGCTCGTATGTTGGGGTGGTCCTTTCTTCCGAACTTCCCCAGAAGGAACGTGAACTCTTCCAAAGCGTTCTTTCTCAGCTGACGGACCTGCGTGTCCAGGCATCAGATGGCGCAACCGATACCATTAACCTGGGTCAGAAGGTGCCGATGGGGCCTCCTGCAGCCGAAGCAGCGCCCCCTGCTGCTGAGGAGGAGAAGGTGCTTCCTGAATGGAGCGAGAAGGTGGCCCAAGGGATCCTGACTGGGGCTTCATGGCTGAGCTGGGGGTTGGTGAAAGGAGCCGAGTACACAGGAAAAGCCATACATAAAGGTGCATCCAAACTACGAGAGCACATAACTCCAGAGGACAAACCGGCCCAAGTCAGCCCCACTGTAACCAAAAGCCTTCATGTGGCCAAACAGGCCACAGGAGGAGCAGTGAAGGTCAGCCAGTTCCTTGTTGATGGACTGTGCACAGTCGCTGGACATGTTGGCAGAGAGCTGGCACCCCATGTGAAGAAACACGGAGGGAAGCTCATCCCAGAGTCTCTGAAGAAAGACAAAGATGGACGCTCCAACATTGATGGTGCCATGGTGGTTGCAGCAAGTGGAGTTCAAGGATTTGCAACAATGTGGACGGGTCTGGAGGCTGCAGCAAAAAACATCGCAAAGAGCGTTGCTGCAGAAACGGTTACCACGGTAAAACATAAGTACGGGGCGGAAGCAGGCCAGGCCACAGATCACGCTGTCAACTCGGCCATCAATGTGGGCGTCACCGCGTTCAATATCGACAACCTGGGGATCAAGGCTATGGTCAAGAAGACCGGCAAAGAGACTGCCCATGCCATCCTCGCAGACTATAAAGTCCAAGAACCGAGCGATCAAGTTGAGAAACATAAAGACCAAAAGTAGAGTTTAGATTCAGACCTCTCGTTTCAGGTATCCGTTTTAAAGAGCAGACCAAATGACTGAAGAAGTGGGTGGATACTTGTCCGGTTTTTCACTGACTGACACTGAACTCCAAAGACTTTCCTACAGTTAATCGTTCTGTCGTTTACTACTCTGCCGGACAGTATTCCTGATCTTGCCTTACACTTCACCAGCAATTTACTCAACTAAACGTATCACCAATGATTTTAGTCATattaaatgttgaatatttttggcttgtgtctttttaaatgcaccCTTAAAACAAAGTACACGCCAAATGTGGACTTTCCCATAGAGCCTTAACAAATATGATAttcttgtatttaaaaatgcatatatctatatctaaaGCTTTAATATAAATAGAGTGCTGTTTTATATGCAGACCTGTTTGCTCTTGGTacttcaggattttttttatgttttaaaaagcactttaaccCCTGCTAGGAATAGATATTGAAATTTCTTGACGGGTTCTAGGTTTTATTGAGTataagtgcaataaaaaaatagaattgcaCTTGCGGTGGGAATATGATACAGAGATCTCTTTTATTTAGAATGCAGAAAAAACGAACTTTATTGGAAATGTTAAGTTTTAaggtttaaaatatgtattttataatgttaatgttacaaTACGATAACATTTCAAGTGGACAAGGCTTAATATTTACTCAACTGAACTGTAaaatgccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacatacacacgaAGTCCTCCCACTGTATATATTGACACTTATAAATCTCATCTCTATGCAGAGACATAGATTTTTGATTACTGACCATGTTTCTATAgatcatgtataaatataaacttgAACTTCCATAACATTTCACTGTAAACGTTAACGGAGTTGTTCGTTCTTTGTGTCTGTTTTGATGCAAAATGTGTCTCATTTGAATGTATGGACGACATAAGTAAGCATCAAGTTTAACCACAAGTCAGTAGGTTTGCTCAGTGACAGATAATGTAATAACCTATGGTTATCTCTgacttaataaacaaaacatttaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252610.1 lncRNA upstream 197804 18054268 ~ 18072232 (+) True LOC122358481
XR_006252611.1 lncRNA upstream 197804 18060952 ~ 18072232 (+) False LOC122358481
TU158859 lncRNA upstream 202918 18054268 ~ 18067118 (+) False LOC122358481
TU158857 lncRNA upstream 203161 18060989 ~ 18066875 (+) False LOC122358481
XR_006252612.1 lncRNA upstream 410232 17857907 ~ 17859804 (+) False LOC122358482
XR_006252642.1 lncRNA downstream 159485 18442695 ~ 18443413 (+) True LOC122358786
TU159041 lncRNA downstream 242395 18525605 ~ 18526233 (+) True G107688
TU159042 lncRNA downstream 250339 18533549 ~ 18534339 (+) True G107689
TU159046 lncRNA downstream 276270 18559480 ~ 18559755 (+) True G107693
TU159080 lncRNA downstream 387120 18670330 ~ 18675897 (+) True G107713
XM_043259085.1 mRNA upstream 15985 18240649 ~ 18254051 (+) True postnb
XM_043259086.1 mRNA upstream 15985 18240650 ~ 18254051 (+) False postnb
XM_043259084.1 mRNA upstream 32731 18221272 ~ 18237305 (+) True trpc4b
XM_043258537.1 mRNA upstream 230737 18037113 ~ 18039299 (+) True LOC122358680
XM_043258285.1 mRNA upstream 459268 17798086 ~ 17810768 (+) True trim3a
XM_043258671.1 mRNA downstream 1749 18284959 ~ 18315536 (+) True dclk1b
XM_043258670.1 mRNA downstream 1754 18284964 ~ 18317179 (+) False dclk1b
XM_043258669.1 mRNA downstream 1755 18284965 ~ 18315536 (+) False dclk1b
XM_043258672.1 mRNA downstream 19802 18303012 ~ 18315536 (+) False dclk1b
XM_043258673.1 mRNA downstream 105717 18388927 ~ 18396708 (+) True mab21l1
TU158844 other upstream 153083 17832072 ~ 18116953 (+) True G107558
TU158878 other upstream 223132 18045017 ~ 18046904 (+) True G107574
TU158879 other upstream 224002 18045017 ~ 18046034 (+) False G107574
TU158847 other upstream 409383 17859911 ~ 17860653 (+) False G107558
TU158422 other upstream 1755876 16513320 ~ 16514160 (+) False lyrm9
TU159142 other downstream 473133 18756343 ~ 18758836 (+) True G107756
TU159144 other downstream 476372 18759582 ~ 18760497 (+) True G107757
TU159161 other downstream 510870 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159167 other downstream 559066 18842276 ~ 18843855 (+) True G107777
XR_006252666.1 other downstream 710135 18993345 ~ 18995960 (+) True LOC122358990

Expression Profile