RNA id: XM_043259256.1


Basic Information

Item Value
RNA id XM_043259256.1
length 4456
RNA type mRNA
GC content 0.47
exon number 37
gene id LOC122359095
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10521693 ~ 10539063 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCAGGATGCTGCTGTCTCTTCTGTcgtcgctgctgctgctgctgctgcaatgCTCCTTAACGAGCGGAGCCACCGATCCCATCTACCTGGTGACAGTCACTTCCCAGGCGGTGGGTGGCAGCACAGAGACTCTGTGTGCACAGATCCATGAGTCCACAGAAGCACTCTCTATAGTGGTCACTTTGAGAACCGACAATCAAAACCTCACCGTCCTACAACAGGCCTCCATTAAAAAGGATTTCTACAGATGTGTCCCTTTTAAGGTCCCTGCAGTCACTGTGGAGTCTGTGGCATCCGTGGATGTTGTAATCCGAGGGGGAAAAACGTTTCTGAACAACAACACTAAGATCCTCATAAATCCCCCTCAAAATCTTCTTTTCATCCAATCAGACAAGCCTATCTACAAGCCTGGACAAACAATTAAATTTCGCATCGTGTCCCTAGATAACAATTTTTTACCTCGCAATCAAGtgTTTCGAACAGTTGAACTCCAGGACCCTTTTTCAAATCTCATCGGTCAGTGGTTGAATCAGACCACAAGGATTGGTATTTTGGATCTGTCCCACTCCATGTCTCCAGAAGCTGCTCAGGGTTACTACACCATCACTGCTTGGGATGAGAAGAACCAACAAACATCACACGGATTTGAAATTAAGGAATATGttCTGCCAAAATATGAAGTGAACATTGATTTTCCGTCCGTTATAACTGTCCAGGACAAAGAGGTCACTCTGAAAGTTTGTGCAAAATACACTTATGGCAAGCCTGTGCTGGGGTCTGTGAATGCTCAAGTGTGTGGACAGagctataatatatattatattagagcTGATTTCTCTGACAACAATGGCATATGCAAGAAATATTCAATGATGACCGACAGGACCGGCTGTGGGTCTCAGGTGATAAATGTGACAGAATTTGGCTTGTCTTCAAGAGGATCTTTTGAAGTGAATTGTGATGTGGAAGAGTCTGGAACAGGGATAACTATGCAGGGTTCTGCCACAGCTGAGTTTACAAGTGATTACGTCAATGTTCAGTATGAAGACACACCAAGTACATACAGACCTGGTGTGGCCTTCAAGGGAAAGgttgTGGTCACTAATCCACAGTCCAGTGTGTTGAAAAATGAGGTGGTGATTGTATACGCACAGTATGGTGAGAAAAGTGTCAACGTGACCCTGACGACAGACGTCAGTGGGTCTGCCCACTTCTCATTCGACACTTCGGATTGGTCAGAATTACCCGTGCAATTACAGgtTCGTCATAAAGGAGGTAAAGAACGGACTGATTTTGAGGCTTTTAGGTATTATCCGTCAGGCTATCTCTACGTAAGACCCTTTTACTCCAAAAGCAAAAGTTTCCTGATGTTGACGAAGACTCCAGAGAAGCTCAGCTGTAACAGTGATGCAACAGTGACGGCGAGTTACATCATTCAGGGCGGTGCACTGAAAACAGGCCAGAAAACCTTGGATTTCTTCTACATTGTCTTGTCCAGAGGCAGCATGGCTGAAAATGGTcgtctgtctgtgagtgtgaaCACCAAAAGAGaaaacaaaggagaACTGACAATCCCACTGAAGAAGACGGCAGCTCTGGCTCCATACGCTCAGGTGGTGGTTTACACAGTTCTTCCCAATAGAGAAGCAGTAGCAGACAGTATGGACTTCCCCATTGAAGAATGTTTGCCAAACAAGGTGTCTTTAAAGTTCTCGTCTCCCACCGCACTGCCTGGAGAGAAGACATCTTTTAACCTGAAAGCCAGTCCTGGCTCCTTGTGCTCCGTGAGGGCCATAGATCAGAGCGTGCTGCTGCTGAGACCAGAGGCCGAGCTGGATGCCGCCGCTGTCTTTGGAATGCTGCCGGTCCAGATTTTGTCAGGTTACCCCTACAGCATCGAGGAGTTAGAGCCTTACCCCTGCCGACCTCCCTGGGAGGTGATAATCCCACTCGCTGAACCTGCGAGACGCAAGCGATCCCGCTTCTATTACCCTTACTACAGTGACAAAACTGACGCCTACAACATCTTTAGAgcagTCGGAATCAAAATCGCTACCAACTCTGACGTGAAAGCACCTGTAGTTTGTAATAATGACATGTCGATGGTCATGCGATCTGAAGTGTCGGCAGACGATTTTCCAGTTCCAGTGAGAAATGAGAAGATCCGCAAACTCTTTCCAGAAACCTGGATATGGGATCTTATACCTGTGGGGAAATCAGGATCTGTGGATGTCTCCAAGACGGTCCCGGACACAATCACTAAATGGGCAGCAGGTGCTTTCTGCACATCTACTGTAGGGTTTGGAGTGGCTCCCAAAACTAATCTCACTGCTTTCCAGCCTTTCTTTGTGAGCCTTGCCCTCCCTTACTCCGTTATCCGTGAAGAAACGTTCACCAAAGCCACCGTATTCAACTACCTCCCCAAATGTATCATGGTGAAGGTCACGCTGGCAGACTCAGTGCAGTTCAAAGCTCAGCCGTGTAAAGGATGCATTTACACTCAGTGTGTTTGCTCTGAAGAGAGCCAAACCTTCCAGTGGATTGTTACACCCTCTGCACTGGgaaAGGTGAACATTACAGTGCGTGCTGAGGCGGTACAGAGCCGAGAACGGTGTGGCAATGAAGTGGTGACTTTCCCGGACAAAGGCAGAGTTGATACTGTGATGCAGAGCGTTCTGGTAGAGgcagaGGGAACTAAAAAATCAATCACTCAGAATGAACTCATCTGTTTAACAGACCGTCCACAGGAGACATCCGTCTCTCTCAATCTACCCAAAGTCTTTGTCAAGGATTCTGCAAAAAGCTTTGTCACTGTTCTGGGTGATCTGATGGGTCGTGCTCTGAGGAACATCGCTGATCTGTTGGCTATGCCGTACGGCTGTGGAGAGCAGAACATGCTGCTTTTTGCTCCCAATATCTACATCCTTCAGTACCTGGAGAGCAGCGGGCAACTCACTCCTGAGATTAAAAACAGAGCCGTAACCTTCCTGCAGAGCGGTTATCAAAGAGAGCTGACATACAAGCATGATGACGGATCTTACAGCGCTTTTGGGAGGAATGATCCTTCTGGTAACACCTGGCTAACTGCATTTGTGATGAAGAGCTTTGGCGGAGCgaagaattatatatttatagatcaGAATAGTATTGATCACGCAAAGGAATGGCTGGGTCGACAGCAACAGGACAACGGCTGCTTCGCCTCTGTTGGGAAGCTCTACCACATTGATATGATGGGTGGCGTCAGTGATGAAGTCACTCTCTCTGCGTACATCACCGCAGCACTGCTGGAGTTAGGAGTCCAGAAAACTGATCCCATGATTTCAAAAAGCCTTGAATGCCTGAAGGTCTCTTCCCGTAACATCACCAACACTTATGTGACCGCTTTACTGTCCTACACATTCACTCTTGCTGGAGATGAACAGATGAGACAGAGCTTAGTCTCCAACCTGGACCAGCAGGCCAAGAGAGAAGGTGTAGGACGATATTGGAGTTTGGGTAATAATGCTCAACCGACGGGCTCTGTGGAGGTAGAGACGAGTGCCTATGTGTTGCTGGCTCTGCTCTCAGGACCTTCACTGCCTGGATTTGGACTGAACTACTCTGCTAGCGTAGTACACTGGCTAACCAAGAAACAGAATGCGTATGGAGGCTTCTCCTCTACACAGGATACTGTAGTAGCACTCCAGGCCCTCGCTAAATACAGTGCTGCCACCTACAATCCAGAAGGATCCATTACTGTAAGCGTGACCTCCCCCTCAGGCCAGAGGAACCAGTTCACCGTGAACCAGAACAACCGGCTGCTTTACCAGGAGAAACAGCTACAGGAAGCTACCGGCACATACAAGCTCAGGGCAGAAGGCAaaggctgtgtgtttgtgcagTTTGCCTTGCTCTACAATATCCCGCCTCCTCCAGAGGCTTTGGCCTTCAAAATCAAAGCAAATCCTGGGGTTTGCAGCAACACAAAGAACCCAGCTTTTACGCTAACCACCACTGTAAGGTATAACGGCACACGAGCAGAAACCAACATGGTGATCATTAACGTCAAGCTGCTGTCGGGGTTTAAGCCGGATGAGACGTCTCTGCAGGCTCTGAGGGAAGACCCCAGCATCAGACGTCTGGATGTGGATGAGGATCATGTCATTTTCTATTTGGATAGTCTGAAAAAGAGTCAGGAGAAGTCCATCAGCCTGCAGCTCGTGCAGGAAGTACCGGTGCAGAACCTGAAACCAGCTGTAGTGACCGTCTATGACTACTACAAGATCAGTGAATTTTCTGTGGTTGACTACACTTCCCCATGTGCATAAACAATACTGCATTGATATGAAGTGCTAATGGCTGAACTATTGTACACTGGAATATATGGCaacactttttctgtttttctgtcactTTCTTGTAACAATAATTTCTGCATTCTAGATGCTATTAAACAATTTGTCAAGTAATGC

Function

GO: NA

KEGG:

id description
K03910 A2M; alpha-2-macroglobulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155745 lncRNA upstream 13900 10506991 ~ 10507793 (+) True G105469
TU155732 lncRNA upstream 56794 10464202 ~ 10464899 (+) True G105458
TU155666 lncRNA upstream 116360 10405019 ~ 10405333 (+) True G105416
TU155663 lncRNA upstream 129975 10391459 ~ 10391718 (+) True G105413
TU155661 lncRNA upstream 133949 10387483 ~ 10387744 (+) True G105411
TU155777 lncRNA downstream 61715 10600778 ~ 10605466 (+) True G105485
TU155830 lncRNA downstream 133702 10672765 ~ 10675515 (+) True G105517
TU155839 lncRNA downstream 148281 10687344 ~ 10692785 (+) True G105525
TU155840 lncRNA downstream 153278 10692341 ~ 10696794 (+) True G105526
TU155865 lncRNA downstream 214370 10753433 ~ 10775353 (+) True G105539
XM_043259009.1 mRNA upstream 80395 10431565 ~ 10441298 (+) True LOC122358985
XM_043258984.1 mRNA upstream 135462 10353161 ~ 10386231 (+) False snx19b
XM_043258983.1 mRNA upstream 143483 10353161 ~ 10378210 (+) True snx19b
XM_043259641.1 mRNA upstream 171387 10343436 ~ 10350306 (+) True rps6kb1b
XM_043259927.1 mRNA upstream 185281 10325905 ~ 10336412 (+) True vmp1
XM_043258495.1 mRNA downstream 5664 10544727 ~ 10558178 (+) True LOC122358614
XM_043259255.1 mRNA downstream 25426 10564489 ~ 10580681 (+) True LOC122359094
XM_043259270.1 mRNA downstream 124747 10663810 ~ 10672600 (+) True dixdc1a
XM_043259271.1 mRNA downstream 343471 10882534 ~ 11028778 (+) True cadm1b
XM_043259272.1 mRNA downstream 343471 10882534 ~ 11028778 (+) False cadm1b
XR_006252665.1 other upstream 131093 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 314241 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 411252 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 848348 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 897721 9588789 ~ 9623972 (+) False traf4a
TU155825 other downstream 182909 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 831573 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1281498 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 2303114 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 2303114 12842177 ~ 12847378 (+) False spa17

Expression Profile