RNA id: XM_043259270.1


Basic Information

Item Value
RNA id XM_043259270.1
length 2595
RNA type mRNA
GC content 0.46
exon number 15
gene id dixdc1a
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10663810 ~ 10672600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGGAAGACGAGGAGCGAAGAGAAACAGAAGGGCAGAGAAAAAATACCTTAAAACTGCCTCGACAGAGACACAAAAACTAGGAGAATGAGAAACAGGAGCCGCAGAAGATGTTGTAGAGATTCGAGAAGGGGGACGGGAGACCATTCAAAAGCTCTTTTCTTCCCTGTTGTGGCTCAGAACTGAAAACAGGATTACCTCATGCTTCTTATCACAGAAACACATGCTGCCTCTGATCGGGATTTTCAACGTTGAGTCTGTGGGAATACCCATTTAATCTGGGTTTACAGCGCTGTCCAAAGGAAGACCTGCCAAACAAGTAGGTTGGGTTCAAGCGGACGGAGAGATCTGTTCTCCGTCATCATCATCTCCAGCAGACTGGACTGGCAGCTACGTGGACGCTGGGATCTCTGATGCGCACACCCTTTGGACCGGCGCTGGGCCGTCTGCTATGTTGATGACACACCGCTGCTTCCTCGAACCCTTCGGGTTGGGCTGGATCAGGATGGGAGGTTAAAAGGGCAAATAGCATCATGGGAGCCAAACAAATGAAATGTCTCAGTTCGTCCAGTCCAGCACACACACCCAAGGAGGAGTATATTATTGCCAAATCTGAAGATTCAGGAGAGCTAGTGGGAAACCACACGGAGCAACCACAAAGCCTAGagGATGTAGTGAAATCTTTAGCCACCGAGCCATCTCCTGGCCCTGAGCATGCTGGGAAAGAGGAAAGCAGCACATGGGAGGAACAGCTATGTGCCCAGCAGGAACAGCTGGAGAAGGAGATGCAGGAGACCAGGAAAATGGTAACAAGGCTTCAGGCCTTACTGCTGCATGGGTCTCTACCTGAGGACGAGCAGACATCTACTCTGAGCTTTGGAGACAGTACCAGCTCAGAACAGCAGCTGATTTTAACCCGCAGTCGTCTGGACCAGAGTATGGAGGAGTCTTTAGATCTGAAGagagAACTTTTAAGATACAAACAGGAAGCACGTAATCTGCAGGCTATTAAGGATGCCTTGCAGCAGAGGATGTCTGTGCAGGAAGACTCGGTGCTGCAGCTCAAACAGGAGCTGCTCAGATCCAGCATGGACAGAGAGGAGCTGGAAGGACAGAATgTGGAACTAGAAAGGAAGCTGAGCGAAAGAAACAGATTGCTGAGTGAATACAAAAAAGAACTCGGGCAGAAAGACAGACttcttcagcagcagcagtcaAAACTGGATGATGCACTGCGCAGGATCAGTGAAAGCTATCACAGGCTGTCAGGCTGTGAGAATAATGGCTACAGTCACATGATGGATACATCGTCCGCCGTTTTCCAACACAGAATGGGGGACGAGCTACAGCTTGTGCGGGACGCTCTGCGCAGTCTGAGGGACAGTTTCAGCGGACATGACCCACAGCACCACACACTGGACACACTGGAGCAGGGGGTGGCCAGTCTGGTGGACCGTCTCCACACCACAGAGAACAAGAAAAGGCAGGAGAGGAAGGGTTCAAGCAGGTCTCCCGGACGAAAAGCCAATCACACAGACCGAGAATCATGGCCGTCAAGCTCAAagataGCTCACTCCCACAGCAGCCCTGTTCTCAGTGCAGCAGCCTCAACCAAAGTACTCTACTACACAGATCGCTCTCTCACACCCTTCCTAGTCAACATCCCTAAGAGGCTGGGGGAGGTTACGCTACAGGACTTCAAAGCGGCTGTGGACAGACATGGCAGTTTTAGATATCACTTTAAATCTCTGGATCCAGAGTTTGGGACGGTGAAGGAAGAGGTGTTTCAGGACAATGCTGTTATTCCAGGATGGGAAGGGAAGATCGTCGCTTGGGTGGAGGAGGATCACGGAGAGGGGAGATAGAGACTGAGGGTTTCAATCTATTCAGAATGTATGTTTTACCCTACATATACCTCATCCCTGCAAACTCTGAAGCCTTTGTCCTGTCCTAACTGTGAATCTCACTGAACCAGTTCACTATGTCATTACAGCAGGCACGTGTTTGTAATATTGCGTATATGCATTTTGAAGAATGAAagaagaatgtttttaaatgttatcaaAAATGGTTTACAGCTAAATGCAGATTATGTTTTTGAGTGTATTGAGGTTACGGTACATTTTGTTTCGAAAAAGCTAGTATATCGGCAATGCCATTGTGATAAGTGACCACGAAAAgaagattatttaaaacagtatgTGTTTTGTGCAGTGACAAATAATAAAGATGTTGCGTTAGTTGCCAAACTCCGACAAGCATATCACACACTGTGTGCATGTATtgtcatgccaaaaaaaaaaaatccattttaagGGAATCATAAAAAATGTCTGCACAGtcacagtaatatatttttcactaaAATGTACGTCAACCTTTCTTGACTCTCCTTTGAAAATAAGGGGTGGTAAAAGCAGGGACCactttgtttgtaaaaattTGTAACATTTGAACATATTGAAATATTCCTTTTGAAAATGATTGTACTTTTCCTATCAAGCTTGCATGTCTGTTCGTAGTGTTTGGTATCTGTGTTGTAAAAGCAAATGCAGTTGACACTTGTCCACCTTTTATTAAAGGCTTTCCGTGCACA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0021695 cerebellar cortex development biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0043025 neuronal cell body cellular_component
GO:0043679 axon terminus cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005938 cell cortex cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031435 mitogen-activated protein kinase kinase kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155777 lncRNA upstream 58344 10600778 ~ 10605466 (+) True G105485
TU155752 lncRNA upstream 78892 10512389 ~ 10584918 (+) True G105471
TU155745 lncRNA upstream 156017 10506991 ~ 10507793 (+) True G105469
TU155732 lncRNA upstream 198911 10464202 ~ 10464899 (+) True G105458
TU155666 lncRNA upstream 258477 10405019 ~ 10405333 (+) True G105416
TU155830 lncRNA downstream 165 10672765 ~ 10675515 (+) True G105517
TU155839 lncRNA downstream 14744 10687344 ~ 10692785 (+) True G105525
TU155840 lncRNA downstream 19741 10692341 ~ 10696794 (+) True G105526
TU155865 lncRNA downstream 80833 10753433 ~ 10775353 (+) True G105539
TU155876 lncRNA downstream 106648 10779248 ~ 10785938 (+) True G105546
XM_043259255.1 mRNA upstream 83129 10564489 ~ 10580681 (+) True LOC122359094
XM_043258495.1 mRNA upstream 105632 10544727 ~ 10558178 (+) True LOC122358614
XM_043259256.1 mRNA upstream 124747 10521693 ~ 10539063 (+) True LOC122359095
XM_043259009.1 mRNA upstream 222512 10431565 ~ 10441298 (+) True LOC122358985
XM_043258984.1 mRNA upstream 277579 10353161 ~ 10386231 (+) False snx19b
XM_043259271.1 mRNA downstream 209934 10882534 ~ 11028778 (+) True cadm1b
XM_043259272.1 mRNA downstream 209934 10882534 ~ 11028778 (+) False cadm1b
XM_043259274.1 mRNA downstream 462753 11135353 ~ 11138624 (+) True LOC122359106
XM_043259273.1 mRNA downstream 463958 11136558 ~ 11138624 (+) False LOC122359106
XM_043259283.1 mRNA downstream 489484 11162084 ~ 11172202 (+) True LOC122359111
XR_006252665.1 other upstream 273210 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 456358 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 553369 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 990465 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 1039838 9588789 ~ 9623972 (+) False traf4a
TU155825 other downstream 49372 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 698036 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1147961 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 2169577 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 2169577 12842177 ~ 12847378 (+) False spa17

Expression Profile