RNA id: XM_043259272.1


Basic Information

Item Value
RNA id XM_043259272.1
length 4996
RNA type mRNA
GC content 0.39
exon number 10
gene id cadm1b
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10882534 ~ 11028778 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcgcgcgcgtgttTACTCCCTCCCGGTCCTCCGCATCTCATGATCCCGCGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGAAGCAGGTGTTCAACATGGCGATCTCGGGACTCGGATCTCACTCTATTTCGCTCTTTTTCTACGTGATTTTCGCGACGTTTCTGCACGAAGGAGCCGCTCAGACCATATCAGCGCAGGGTCAGAACCTGGTGACGAATAATGTCTCGGTGGTCGAGGGCGAGACGGCCATCATCAGCTGCCGGGTGAAAAACAACGACGACTCAGTCATCCAGCTGCTCAACCCCAACCGACAGACCATCTACTTCAGAGACGTTAGACCCTTGAAGGACAGTCGGTTTCAGCTGGTTAACTTCTCAGACAACGAGctgctggtgtcgttgtccaaCGTGTCGCTCTCGGACGAGGGACGCTACGTGTGCCAGCTCTACACGGATCCCCCCCAAGAAGCCTACGCGGACATCACTGTGCTGGTTCCACCAGGCAACCCAATCTTAGAGTCCCGCGAGGAAATCGTGAGCGAGGGGAATGAGACGGAGATAACCTGCACCGCCATGGGCAGCAAACCTGCTTCCACCATCAAATGGATGAAAGGAGACCAACCACTGCAAGGTGAGGCGACTGTCGAGGAGTTATACGACAGGATGTTCACTGTCACCAGCCGGCTCAGGCTCACCGTCTCTAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCACCCAGCCGTGAAGGACTTCCAGGCCCAGAAATACCTGGAAGTGCAGTATAAACCAGAAGTGCAGATTGTGGTGGAATTCCCTGAGGGTTTGACCAGAGAAGGGGAAAATCTCGAGCTGACATGCAAAGCTAAAGGAAAACCGCAGCCTCATCAAATTAACTGGCTCAAAGTGGATGATGATTTCCCCTCCCACGCCGTGATTACTGGCTCTGATCTCTTCATCGAAAACCTTAACAAGTCCTACAACGGAACGTACCGCTGTGTGGCATCTAACTTGGTGGGAGAAGCCTACGATGATTACATCCTTTATGTATACGATTCAAGAGCAGATGGAGCGCCACAGAAAATTGATCACGCCGTCATCGGCGGCATTGTCGCGGTGGTTGTGTTCGCAATGCTTTGTCTCCTGATTGTTCTCGGACGATATTTTGCAAGACACAAAGGTACCTACTTTACCCACGAAGCCAAAGGAGCGGACGACGCCGCGGACGCCGACACTGCCATCATCAATGCAGAGGGGGGACACAACAATTCGGATGACAAGAAGGAATACTACATTTAACTCTGACTAGACCTGCTAGCTTCCTGTGCTGAACAGCAAACTGTGGACTGCTAGGTTGGGAGGTAGGGGTTGTGGGATTCAATCAGGCTGGATTCACACCTGTGCAGCTGAAGAGACGGTGAGGAGAAGGTGCTGCCATCGAGACGGATGGGGTGTGGGATGGCAGAGCACTAGGAGAGCTCAATTTTAGACCGCTTCACCATCCAACACCTCCTGCTGGGGCCggttttgttcagtttaaacatttgctaAGAATTTTGTGCCTTGTTCTGTTCTTACTGAAGTTCCCACTTTCATCAGGACACCCACAAGCTACTGTCTCTCGAACGGTCTGAACCCACGGTTGTTTTGTTTTCGTCTGAACCCACGGTTGTTTTCATGGATTGATTCCAAGTCATTTATTTGGCAAATTGCCTGTTGCTCTCCTTAGTCCCTTAGAGAAGATAGAAACCTCTTTCGTTGTGACCAACGACATTCAGCAACAGTATTGTgttgttgcattatttattagataTGCTGTATGTGATTATAATCGGCTTGTGTTgatattagggctgtcaattAAACACATTACTTCAAtgccattaaatataaaaataataccacTGAtccaaatgtaaattttttttcaatgacattacacatttttgtccaatctatttatttaatcaaaataatccaGTTTGCAATCATTAGGCATAATGTTTTTAGAAACATTGTCAAAACCGCTGCACTGTTTATTAATATCTGGGTGAAAAATCacaacatttttgtcaaaaatcgataataatgtaatgatatttatggaattaatcatttgtaacgattatttatgaatttataggttgtttataattttataatttataaatggtACATTTACCCAGtttacttttgtcatttttaaagtttaactACTCATATACcgcaaaatattgcattttaacaaaatgacaaatcCTCTTGTTGTTGGACAGACGAGACAACCTCTAAAATGATTTACTGTGGACTGTgggttgattgattgacttcTATTCAATGATATGGAAATCGAACAAACGGTATATTGTCCTCCTATGcctaatttgaattaattagattaattcaTCAGCATACATTTGTAGTTGGTTTGCTTAACTTTTAAACGATTGACAGCCCTAATTGTTCCTtagatatactgtatgtgattATAATCGGCTTGTGTTGATATTCATTCCGGCTTGTATTGCATTATCCATATACCAGCTTCACACACCGactaatttattgtaattaacgCCCAAGCATTAAAATTGAATGCCAAAGCAAAGAACAGCAGATCGGCTCCTGGCTCAGCTGTACAGGAAGGCCGTCACAAAGATGTCCCCTTCTACGAAACACAACATATCTATCAGAGTGTAAAATAGCTTTCATTTCTAGCTTGTTCTCATTCAGTAGGCTCAGTATGAGGTTGAGGTCAGTGAGTTTCTCCGAATATTGTTAGTGCTTCTGTGCGCTTCTTAtagtgacataaaaaaaaaaactttcgtACTAAATGAAATAGATGGAGCCTGTATGTTGTAAGCCATACTCACAGTTGTGCCCTCCAACACATTTTTGGTTAGCAGCTCTTATTCTCGATTCCTTCAATCCAGCTTATGTGTAGATGCCAGGTTGAATGTAATAACTCTACAATAATGCGATAGTTTTTAAAAGTTCTGTTTCTCATCAAACATGCTTTGTTTTCAGGTGATGTATGCGAGGGAGAATTTTACCAGGGACATGTATTGTGTTTCCTCGCTcgtaaatgtattataaatgtatagagCGTggaattattacattattgtagAGTTAGTCTATAGTTGGTGAAATATTACACTCATATCAGGCATTGTTTCATATCTTTGGCCTTCGTTCAGCATCCTAGACAGTTGGACAGATGCGTATTGTTTGTGATTAACTACATGGGGGCAATTTGGAGTTATGGTGAGAGTACGGTTAACATTGTAAAATCCTTGTGACAAAATTGTTTGGTCATAGCGTTTACATGAATTTGTGTATTATCAAgtgttattttttctgtttgtttgttttttattagtgttattcCTGAGATTATCTGACAGGTGAGCATTATTTAGATTTGAAACGCTAATAAATTATGGTATATTCGTGCGAGGCTCTCGTAGCTAATGCCACTCTTTATACTTGGTTATATGGAAAGAAACTTTCCTTTTGATCGTCATTGTATGTTGTACAGAATTTTGTGGTTTTATACAGCagcagatttatttaaacatatcaTATTCTGAACGCCTACGACACTAAACTGATTGagaatgaagaaaatgaaagttaCATTATGccccctaaaaaaaaaaaaaaaacaaaaaaaaaacgttggcCCCAATTTCATAcattactattcaaaagttgGGGGtgaaaagatttattattatttttttatgaattaatacttttattccaCAGATATGACAGTAATGATGTATATAACGTtagaaaaaatctatttaaaataaatgctgttatttattttaacggtatactgaatattttaaaatacgtaTCATagtttatacaaaaatgttaagcatcACAGCTGTTTACAACGGTgattataataagaaatgtttcttgagcaccaaatcagcatattacaatagtttctgaaggatcatgtgacactgaagaatgctgaaaattcagctttgccatcaaaggaatacattaattttatttattcaaatgaatgcaaCTTTGGTGAACAAAagagacttattttaaaaacatcaacaaaaaatcttatcaaccccaaacttttgaactgtagtgtacatacagaaaatgtgcatCCGATTGACATTCCAAGcatgtgaattttaaaaaaagcatttataattgtatattatataatttctcTCAATTATCATACTGTAATTGTAATGGCATGAAGCTATTTCCAACTTATGTCAAATATGGAGTGAGGGCTACAAAGAGTCATAACATGGTGAGGGTTTCCAGAGTGGATCCACCAACCCATACAGCCAGATCActcttttactttcttttctaacgtttattttaatatttacaagtGAAATGGTAAGTGATCTAAAACTGCCcaaacctggagaaaaaaaaaagaaaacatgcacacacaaacatacctTCAGCGTAGGTTTGATTCTGCCCTGTCTCAGGTCTGTctatgaattcattttttgcaTCTCAGGTAGAATGCAAAAGTGATGCCCCATATCTGAAAAGACTTTAagttattatcaaaaaaaaaaaaaatcctgcagaATAGAGCATGTTCGACATGTTTTATCTGCGCTTCAGATGCTGTGCACTGTGTAAATGTTCATATTACTTTGTATAGTTAGGACACAGCAGATGataggtttatttaaaaaaaataaataaatctaagaaGTGAATCTTAGTGCTTACATTTACaattcattttccatttttagaCAACCTGTACCACCAGAGCCATTCTTCATTGTTTTCATAGGTTTTATGTCAgatatttttgtctcatctctgTAGTTTGTATTCCTGTGTAATTAAAGTTATTTACATGTTCCCGATTACACTTTGTATTTGaccatgaaaatacatttttacagaaatggAGCAGTACTGTCTTAATAAAAAGAGGTATTAATGTTCAAAAAGCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155881 lncRNA upstream 86157 10786021 ~ 10796377 (+) True G105550
TU155876 lncRNA upstream 96596 10779248 ~ 10785938 (+) True G105546
TU155865 lncRNA upstream 107181 10753433 ~ 10775353 (+) True G105539
TU155840 lncRNA upstream 185740 10692341 ~ 10696794 (+) True G105526
TU155839 lncRNA upstream 189749 10687344 ~ 10692785 (+) True G105525
TU155955 lncRNA downstream 44545 11073323 ~ 11452038 (+) False G105587
TU155957 lncRNA downstream 44545 11073323 ~ 11441883 (+) True G105587
XR_006252685.1 lncRNA downstream 70076 11098854 ~ 11100427 (+) True LOC122359117
TU155987 lncRNA downstream 151254 11180032 ~ 11185102 (+) True G105601
TU156012 lncRNA downstream 301147 11329925 ~ 11330320 (+) True G105622
XM_043259270.1 mRNA upstream 209934 10663810 ~ 10672600 (+) True dixdc1a
XM_043259255.1 mRNA upstream 301853 10564489 ~ 10580681 (+) True LOC122359094
XM_043258495.1 mRNA upstream 324356 10544727 ~ 10558178 (+) True LOC122358614
XM_043259256.1 mRNA upstream 343471 10521693 ~ 10539063 (+) True LOC122359095
XM_043259009.1 mRNA upstream 441236 10431565 ~ 10441298 (+) True LOC122358985
XM_043259274.1 mRNA downstream 106575 11135353 ~ 11138624 (+) True LOC122359106
XM_043259273.1 mRNA downstream 107780 11136558 ~ 11138624 (+) False LOC122359106
XM_043259283.1 mRNA downstream 133306 11162084 ~ 11172202 (+) True LOC122359111
XM_043259282.1 mRNA downstream 133306 11162084 ~ 11172201 (+) False LOC122359111
XM_043259284.1 mRNA downstream 133344 11162122 ~ 11172202 (+) False LOC122359111
TU155825 other upstream 154139 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 491934 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 675082 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 772093 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 1209189 9669634 ~ 9673345 (+) True G105011
TU156035 other downstream 341858 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 791783 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1813399 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1813399 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1813399 12842177 ~ 12847378 (+) False spa17

Expression Profile