RNA id: XM_043259284.1


Basic Information

Item Value
RNA id XM_043259284.1
length 2425
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC122359111
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11162084 ~ 11172203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGCTTTCATGCATTAACCGTTGGCACTGTGTAGTTTCTCATTCATTTGGAAGGAAGAACCATCTTCGCACACGAAGCTGAAGTGATGGTTCCCAGCTCTCTGCCATCATACGCACATGCAGGGTCTTCCAGCTTTGTAGAAGGCAACCAGAGCTGCTTAAATGATTCATTAGTGGATGTAGGTGGGCTCTGCACAGGATGGATTGCCCAGACCACCAGCACAACTGCCCTACAGCCTCTGAGTCACTGGACTCCTCCAGACCAACAGCACGACCCTGTCATCCCATGTCCTCACACAGACATGTATGTCCAGCCGATCTGTCCCAGTTACACGGTGGTGGGCCCTTCCCCTGTGCTgacctttacacacacacctctcttcACTAACCTTGCGACCATGAGCACTTCTAGCTCAtccctgcctcaggtggaggtcCCAGACTCGTCCTTGACGTACATTCCTTGGGCTCAGCCTTTATCCACCATCTCCGGCTCCGTCGTGCAAGCCCCCTCAATGCCAGCGGCCCTGACGGGCCCCCAGCTCTTCCCAGTGCCTCTGACCTTGCCAGTAATCTCTCCAGAACCTGAGCCTCAGCAGGTGGAGACTCCCCAGGCCCCTGAGGGCACTCTGGCCCTTGAGAAACTGCTGGAAGAAGATGAGGGCCAAAAAGAACCCTATATTTGCAACTCCTCGTTGTTTtcagaagatatttaaaatatccgTCTTAACTCTTTTTTGCAGCTTCTTTAATAGATACAGAAGCATTTAGTACAGCATTGAGTGAAAAAACgactgtgcatttttaaaagtaaaggtTCCAATAGAACAACCATTTTtggttaaagttttttttttaaataaagatttcagTGAACAATTCCTAAAATacccattttaaaaatctattgaaCCTTTATCAACTATAAAAAACAAAGTTTCCATTGATGTTCAAGGTTCTTCATTGATACCAATAAAGGAACTTTCTATTTAAGATTGTGGAGGGATACATTCCTAAAAATGAAAGGTTCTTCATTGGCATTAATGGTTCTATTAAGAACTTGGAGCCTTTCCAGTCTAGAGGAGGTTCTTTATACTAGAAAAAAGTTCTAAAATGAAAGCATCTTCGGAGAACTAAAAAGGGTTCTTCTGCAGTGGATTTTCTGCAGCtcttttggaacctttatttttaagttcagTCAATTcaagtcatctttatttatagagcTTTACACAATGGAGGTtgtattaaaacagcttcacagTATTAATCAGGAAACAGAACCAAGAGAATCAAAGATTCAAACATCATTGTCAGATacaatcaaaaattatgttttaaagctctaaaaaaacaacaacagtgtcATATTTATCTCCGGTCAGTTTTGATTCGGTACAGTTCATAAATTGTCAAGTTCAGCAATCATGAAACAAGTTAAATtgagcaacaaacaaaaaaaaaagctgaatcaaTTTGAGCCAGTTTAGTGTTGATACAATTGAGTTCTAGAACTGTGTCAATGTTGCAAAGTGAAGCAGCTCTTGAGGACAATCGTatcattattcagctcaattATTCAAAGACGTTTTGTTAACTGAATTATTGAGAGAGTAGATTAACGTTCATTTTAGCTCGATTGTGTAGCTTCAAGAAAAAAACCTGTTTACGGTGGCTAAAATGCTAACATTTACAGAGTGCTGTTCTTTACGGTTCATGTCAGTTAGAATTAGAAAGCCAGAAGTTTTCTGAAAGTTGGAGAAATCCCCTAGAGATGTTATCatgttatcattttatcattttaacctGCAGGCTTAGTTGTCTCTCAAGTTAACACCTTTCCTAATGAGATGTTTAAATAATGCTCTGCTCTGCGCACACTCTACCATCAAATCTGCTTCTTTAGAGCATCTGTACATCACATCTCCTATTCAAACGGGTACAACAATAAAGAGAACGTGCATTTGCAAATGTTCTAGTTTGTACGATTTGTTTTGTCATGGTGTGAATGATTGTGAAATGTGACTTGATGCTTTATAATAGCTTTCATATGGTTCCACGGACTggctgccaaaaaaaaatgttgtgttgcCAACAATAACTATGTTTCAGCGCAAAAACCCTGCAACAGGCAAAGACAATAAATCAGGATCACAGCAAACCTTTGAAGAAAACAAAGCTAATCGTATATTATTCATAAACAGTTGGGACATTACATCTGTCCAAAGACTGATTAAGATTACATAGATCATTTTTATGGGAGTCTGGCTGTTAAAATGATGACATTGAAAGTCACTCGAATGAAGGTTTGTTCATTTCGATGAATGAGATCCCGTCTGTAATGCATGGGTGACTAAACtgacaaaacacaaatgttatCACATAAAGATAGACAatgaacagaagaaaacaaagaatttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252685.1 lncRNA upstream 61695 11098854 ~ 11100427 (+) True LOC122359117
TU155881 lncRNA upstream 365745 10786021 ~ 10796377 (+) True G105550
TU155876 lncRNA upstream 376184 10779248 ~ 10785938 (+) True G105546
TU155865 lncRNA upstream 386769 10753433 ~ 10775353 (+) True G105539
TU155840 lncRNA upstream 465328 10692341 ~ 10696794 (+) True G105526
TU155987 lncRNA downstream 7830 11180032 ~ 11185102 (+) True G105601
TU156012 lncRNA downstream 157723 11329925 ~ 11330320 (+) True G105622
TU156014 lncRNA downstream 158218 11330420 ~ 11331300 (+) True G105623
TU156019 lncRNA downstream 166063 11338265 ~ 11338933 (+) True G105628
XR_006252604.1 lncRNA downstream 302226 11474428 ~ 11477539 (+) True LOC122358459
XM_043259274.1 mRNA upstream 23498 11135353 ~ 11138624 (+) True LOC122359106
XM_043259273.1 mRNA upstream 23498 11136558 ~ 11138624 (+) False LOC122359106
XM_043259271.1 mRNA upstream 133344 10882534 ~ 11028778 (+) True cadm1b
XM_043259272.1 mRNA upstream 133344 10882534 ~ 11028778 (+) False cadm1b
XM_043259270.1 mRNA upstream 489522 10663810 ~ 10672600 (+) True dixdc1a
XM_043258180.1 mRNA downstream 83121 11255323 ~ 11259381 (+) False LOC122358387
XM_043258181.1 mRNA downstream 83121 11255323 ~ 11259381 (+) False LOC122358387
XM_043258178.1 mRNA downstream 83707 11255909 ~ 11259381 (+) True LOC122358387
XM_043258179.1 mRNA downstream 83708 11255910 ~ 11259381 (+) False LOC122358387
XM_043258280.1 mRNA downstream 119151 11291353 ~ 11297720 (+) True LOC122358473
TU155825 other upstream 433727 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 771522 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 954670 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1051681 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 1488777 9669634 ~ 9673345 (+) True G105011
TU156035 other downstream 198434 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 648359 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1669975 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1669975 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1669975 12842177 ~ 12847378 (+) False spa17

Expression Profile