RNA id: XM_043259389.1


Basic Information

Item Value
RNA id XM_043259389.1
length 5884
RNA type mRNA
GC content 0.51
exon number 27
gene id ulk2
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12215249 ~ 12243233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGCTCTGTCATTGTAATGCAGCAAGCCGCGATCGCGGCCAACTTCTCGGAGCGACCCGAAGATAAACGTTAGACCCCCTTCACGCAACGGATCGTGCTTTTGACGTCTTTTTTCGCCTCTTTTAAAAGCGGCCCGCTGATGTTTTCCTGCACTGTGCCGCGAGACCGAAAGCGGGACAAGGGGGCGAACTGAAGAAATGGTCTGTCGTTACCCAGCTATCATATGGATTTGAAGGAGAGTACCACAGAAGCAGAAGGACAGATGACTATTGCATTAAACAGATAGGAACGGAGCTGGATTGCGTTTTTTATGAACTGACCTGTCATTACATAAGCGGCACTGCTCGTCTATGTGTGAAATAGATTAGATGTCGGAACACTTCTAGATATTTACTGCGATTTATCTGCTGTGTTGTAACCATAAATATTGGATTTAGCCGGCTAGCGATGGGAAACTCAACGACCCACCGTGCCGTTATTGAGTTAACGAGGCACTATTACAGTAACGTTAAGAGAGAGAGGGCGTCCGCGACCTCTTTCTGTCCCTTTAAACTGAACTGACCATCATGTAGCTTGGAAACTGTACAGGCTTGAGATCAATCAATAGCTGTTTCATCTAGCTATTTTTGCGAAATGTCTCGTTAACTGGGTCAGAGAGCGACAACGGAACTAGTTACGAGCATCCTGCGCGCCTGACGTTAGCTGGTAAACTTCACGTTTAgctattgcttttgtttttatttcgaCCTCGCCTCGATTTTTCAAGACGGACGGCTAATAGGAAACTCTCAAGCGTCTTTCTCGTCCATCATTCGGGGATGACGGGGTTCCCGGACAGACTGTCTTCGGGGTTAACGTTAGTTTGAAGAACTTGTCCCCCGTGGCCTCTCCATCGCGAGCTGTTGTGTATCACCGGACACCTGCCAAAAAAAATGGAGACGGTGGGAGACTTTGAATACAGCCGAAAAGACCTCGTCGGACACGGAGCCTTCGCGGTCGTCTTCAAGGGAAGacataaaaagAAGACTGATTGGGAGGTCGCCATCAAGAGTATTAACAAAAAGAATCTCTCCAAATCTCAGATTCTTCTCGGCAAAGAAATCAAAATTTTAAAGGAACTCCAACATGAGAACATTGTGGCGCTGTACGATGTCCAGgaaaCGCCAAGTTCTGTTTTCCTGGTTATGGAGTACTGCAATGGAGGAGACCTGGCAGACTATTTGCAAGCCAAGGGCACTTTGCGAGAGGACACACTGAGGGTCTTTCTACAGCAGATTGCCGCAGCCATGCGCATCCTCAACAGCAAGGGGATCATTCACAGGGACCTCAAACCTCAGAACATCCTGCTGTCCTACACGGGCCGCAAGAAGTCCAGCATCAACGGCATACGCATCAAGATTGCTGACTTTGGATTTGCAAGATATCTCCAGAGCAACATGATGGCCGCCACATTATGTGGATCCCCAATGTACATGGCTCCAGAGGTGATCATGTCCCAGAACTATGATGCCAAAGCTGACCTGTGGAGCATTGGGACCGTTATTTATCAGTGCCTCGTGGGAAAGCCGCCTTTTCAGGCTAACAGTCCACAGGACTTGAGGATGTTCTATGAGAAGAACAAGACATTGGTGCCAAACATCCCGAGAGAGACGTCTCCTCAGCTGGTAGATCTGCTGCTGGGATTGCTCCAGAGGAACCAGAAGGATCGTATGGATTTTGACACTTTTTTCAGTCATCCTTTCTTGGAACCGTCATCagctattaaaaaatCATGCCCTGTGCCAGTGCCTACGTGCTCTGGCTTGGTGACAGACAGCACGTGTGGCAGCTCTCCTTCCTGTCGTTACGTCTCTCCGCCGTCCCTGCCAGACATGCAGACTCTCCCCGAGGATGTCTTGTCCTCTCCACCTCTCGGCCCTCCCAACTACCTGCAGCTGTCCAAAGAGTCGGGCGGCAGCACCAGCAGCAAGAACTCCTCCTGCGATACTGACGACTTTGTGCTGGTGCCCCATCTCTCTGGAGAACAGTCCTATGAACCTTCTATGGGTGCAGTGGCCCGCAGGCCGTCCAGTGAATACCTTCTGTGCGGAGGACCACCACAGCCATCCTCCGGACAGACCCCGATGGTATCACCCCGAAGCGAGACCACGCCAATACCTGTGCCCACACAGGTGCGAAACTACCAGCGTATCAAACAGAACCTGTCCAGCAGCCCAACCACAACACTTTATGGCTCTCCCAGGTCAGGCACAGTGAGGCGCTCCAACACTAGCCCCATGGGCTTCCCTAAAATGGTGTCTGGGTCGCCTAGCCCGGCAGATACGGTCCAAACGGTGGGTCGACGTCTCTCTACGGGCAGTTCCCGGCCCTACTCCCCCTCTCCTCTGGTGGGCACTATTCCCGAGCAGCTCGGCCACTGCTGCTGTGGACATCCCCAGAGCCATGAGCCACGCAGTCGCAGCTCCTCAGGCGgTTCCCCTGTACCGTCCTCTCAATTACTGGGCGCTCGTCTTCAGAGTGTGCCCACGCTGACTGACATTTACCAGAATAAGCAAAAGCTACACAAGCAGCTGTCTGACCCAGTTCACCCTACCGCCTCAGCCTACCCCACCAGCCACTCCCCTCAGCTCGGTCGCCCCGGCAACCTAGGCACCTCCCCCACCAAGCACCTTGGCACCTCCCCTCGTTCCTCCGACTGGTTAACGAAGTCACCGCTGCCCACTATCATCGGCTCTCCTACTAAAGCAACCGCTCCATTCAAAATCCCTAAAACGCAAGCCTCGTGCAACCTCATGGCTCTGGCCTCCCAGCAGGGTATGTCCGACAGCCCCATCCCAGTTAAAACACTGATGGACGGCCGTGATCTCTGTGTACATCACTGCTCAGCATATCCCAGCAGCCGCCAGTGTGCACCAGAGGCCAGCAGGACTTCCTTTGGCAGGTCTGTAAGTGCTGGCAGACTGTCTGAGCATCCGGTGCGGATCACTTTGGGAGGACAGCCGTACCAGGGCAGCACAGACAGCCTCAACACAGAGAGACCCATGGACACAGCCCCGGCAGGGACTTGCGGTTTGGCGGCAGGCGGGGCAAGTCCCCGCACCGTTGTGTTCACGGTGGGCTCACCCCCCAACAGCAGCACCCCTCCCACCTGCAGCCATCTCGCCTCCCGCCCACGCACCACCTCAGGCTCCAACAGCTCGGCCGGCTCGCTGTGCTCCACCAGCGGTAGGGTGTACATGGGCTCTCCCCCGGGCATGACCATCGGCAGCTCCCCACCAGGAGCGGAAGCGGCTCCCAGCAGTCTGCGCTATGTCCCGTACGGCACCTCCCCGCCCAGCTTGGATGGATTCATAACCTTTGAAGCTCCAGAACTGCCAGAGGAGACACTGATGGAGCGTGAGCACACTGACACTCTGATGCACCTGCGGATGATGCTGTCTTTCACCGACTGTGTGCTGGAGATCGCTTCTCTGCGGGCCGGAGGACCTGATCTGGGTGCGTCCGCCGCCTCTCTCTACCCGCCCCAGGACAGCGTGGTGGTGGATCAGATCAGTCAGCTCAGTAAGGAGTGGGGACAGGTGGAGCAGCTGGTGTTGTATATGAAAGCTGCGCAGCTGCTGGCCTCCTCACTGCATCTGGCCAAAGCCCAGATCAAATCTGCCAAACTCAACCCATCCATGGCTGTCAAACAAGTGGTAAAGAGTCTGAACGAGCGCTACAAGAGCTGCATTTCCCTGTGCCGCCGCCTCACTGACAAACTCAACCACTTCTTCTCTGACAAGCAGCGATTTGTGGACGAGATCAACAGTGTAACAGCTGAGAAGCTCATTTATAACCACGCTGTAGAGATGGTGCAGTCGGCTGCTCTAGACGAGATGTTCCAGCAGACAGAAGACATCGCATATCGCTACAACAAAGCCTCCATGCTCCTGGAAGGCCTTTCCAAGATCCTCCAGGATCCAGCTGATATAGAAAACGTCATTAAATACAAGGCCAGCGTGGACCGGAGGATCTCAGCTTTGTGTTACTGCACCGTGACCCTGTACGAATAAAGAGCATGATGTGTAAAATCTCGGCCAGTGCTCTCACTCCAGGGACCATCATCTTCTCGAACCCCAGAGAAGACTAAAACAAATGtctcgtttttgttttgtagcaCTTTCCGTTTCTTTCGATTCCTTTCAATCACAAGCGACAGAccaagtattacatttttttgcagatgACATTTTCTGAAGGATGTGCAAAAGTTCACTACCAAAGATGAAAACTAAACAGAGACTTTATAGTTCAAAAAAGCCGTTGGACCTGCATTTGGATCCATCTTCTGTCCCCCCTCccgcccttttttttttacatgaactaAAGGGATTTTGTACTGGGAATCATTGGAGACCCAGCAAATGAACATCAATGCAAATCTGTTCATCTTATTGTTTTATACCGCACTATTGCtttgattatttattgtatttttagaattatatgCTAGTGTTATTGATGATAGTATTGAAAGAGGACATCGACGTGGGCTGGATGTGAAGCCCAAAGTCGGACCGTAACTTCtggtaccacacacacacacagtcacatggCTGAACTTAGGAGGAATCTGTAGTATTTACAAAATCAGCTTTGAAGCAAATGCACTTTATTGAGGCAGATGTGAAAGACGCTTGTCCTAGAACATCTGGCAGAAGGTGGAGATCATGATTCTTCAACCTTCTCCAAGGCTCTGGTTTCTTCCCGTCTCCGTATCTGAAATCCTCCGAGTGTCTGGAGGGTCCGTGAGCATCAGGTTGGTTGGATATCGGCGCCACATAAGAGCCTCGTGGTGAATCATCCATTATGGTCAAAATACTTGAGTAGTTACTTACCTTTTCATTCAGCCGTACTGAAGCGTTTTTATGTTCATATTAATACTGTAGCTTTTTTTAACCGATGCGTGTGAGCTGTACATACTTGTAcattctgcatgtgtgtgtgtttttattttggagtgAATGCGAGCGAGCACAGCGTGATTGAAGAAGGTGGATGCTGCCGCCACCATCCCTGCCTCCCGACTTAAGAGCACAAGATCTCCTCGtttttttaagggttttttgtttctttgtagaGGCAATAGACGCCGACCACTTCCACAGATCCTTCGAGGCCTCACGGAAAGCTCAAGACCTCACTTTGCATGGCAGCTCTTGATTAACTCCCATGAATATCTTGTGTACGATAAAACATTGACTGTGCGGGATGTGGATGCGGCAGGTAAATGGGATGGAGCCACTGCCAGGCTCTGCGTTTCCGCTTTCATCCACTGTGCTCACGACGGTGTTGGTGTAACTGCACTTCCCAAGTGTTGCAGTGGCCAGTTTCAGGATACTGAAGAACCGAAAGCATGACTTTAAGCGGTCTACTTTCACTTGTACATGTTATTGAACACCTCACCTCCCTCTTTCCTGCACCTccgtctgtttttatttttaaaacggcCCCTCGTGAGCCTACCAAGCCTTTACTGTACAGAAAGAGAAGGCTGTTCTGCCATAAATCCATGCATATCTGTAGTTGTAGGACTTCTTTATCCAGGTCTGAGGAGAACTGTGTACAGTCGAACTGTTAGAGAAGACACATGTACCTGTGGAACGTTAGAATGTATTTGCCCTTCGTTTAGCACCTTTCCTATCTGAATAAACGCTTACCAGCCTATCACAGCCTGACACGACATGATCACGGCCGATGCAGCCTGAAGGCCCCGCTCCCTTGATTTTCAGTGAcaaatgttgatgttttaaatgttttaatcaatGTGTGTTTTACCAAGGGCATCTGTGTTGTCTGAAActgtagaaatgcagtttttgtttattaaacagaTCAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156397 lncRNA upstream 117603 12096904 ~ 12097646 (+) False tnfaip1
TU156396 lncRNA upstream 117752 12096904 ~ 12097497 (+) False tnfaip1
TU156398 lncRNA upstream 117792 12096904 ~ 12097457 (+) False tnfaip1
TU156393 lncRNA upstream 122096 12091854 ~ 12093153 (+) True G105870
TU156376 lncRNA upstream 144386 12070299 ~ 12070863 (+) True G105860
TU156420 lncRNA downstream 8656 12251889 ~ 12252728 (+) True G105890
TU156437 lncRNA downstream 26398 12269631 ~ 12270174 (+) True G105901
TU156435 lncRNA downstream 27183 12270416 ~ 12274350 (+) True G105900
TU156436 lncRNA downstream 27183 12270416 ~ 12274040 (+) False G105900
TU156432 lncRNA downstream 27367 12270600 ~ 12274040 (+) False G105900
XM_043258596.1 mRNA upstream 71058 12098635 ~ 12144191 (+) True sgsm2
XM_043258597.1 mRNA upstream 71058 12098635 ~ 12144191 (+) False sgsm2
XM_043258598.1 mRNA upstream 71058 12098635 ~ 12144191 (+) False sgsm2
XM_043258599.1 mRNA upstream 71058 12098635 ~ 12144191 (+) False sgsm2
XM_043258600.1 mRNA upstream 71058 12098636 ~ 12144191 (+) False sgsm2
XM_043259405.1 mRNA downstream 147901 12391134 ~ 12397148 (+) True usf1
XM_043259407.1 mRNA downstream 147901 12391134 ~ 12397148 (+) False usf1
XM_043259406.1 mRNA downstream 147901 12391134 ~ 12397148 (+) False usf1
XM_043259409.1 mRNA downstream 147902 12391135 ~ 12397148 (+) False usf1
XM_043259408.1 mRNA downstream 147903 12391136 ~ 12397148 (+) False usf1
unassigned_transcript_2151 other upstream 394617 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 843322 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1486854 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1824649 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2007797 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 598944 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 598944 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 598944 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1673340 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2673272 14916505 ~ 14916883 (+) False tbx4

Expression Profile