RNA id: XM_043259391.1


Basic Information

Item Value
RNA id XM_043259391.1
length 3255
RNA type mRNA
GC content 0.45
exon number 14
gene id ubash3bb
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12404837 ~ 12418311 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATTTCGGGgaaagtaaatgatggcagactTTCACTTGAAGttagttttcagttttaaacacGAGGTTAAATGAAGTCGCCGCTGTTTTCCTGCTTCAGACTCATTTATCACGGGTCATTGTTCAGCAGGAGGTGGGGCTCCAATTGTATGTTTCGGATAGAAATGAGAAACAATTGACTTTGCATTGGTAGCCTTTCACACCCATCCTGTTCTTGTGTCGTAAAGGCATTTTTGTGCAGAGACGAAAGTGTTTATTGCAGCAGACATGGTTGTGAATAGACTTAATTAAACCTGTATTATAGTGAACATGCTAATTGGAGAATGTCTTTGTATCTATATGAATGGCAATATGTGGATTAATTAAACTCGCTTCACGTTGAAATACAATATAAGGTAAGCGACGGTAAATGCGTGTAGTTATCTTGTCTGTTACTTTTACTTTACGGCTTAGACTAGGTAAATTAGGCTAATTATAGCAGGTTGTCAAGCGTGACGAGTAAACGGGTTATGTGTTTGAGACGCATATTACTTGGGCTGTGTCTCAAAATCTCGTGACCTGCCTGCTTGAAACCCACCAATGATGTCCGAAACGCTGTTTAGTAAGCAGGCGGCtcaaaagcctttgaaacgcaGCCATTATCTGTAGCTCGTTAATCTACTGTATAACTACTGTATACAAACATACGCCGCCGCTGTCAGGAGGAGGGACGGTTATGCCTGTAGTCGTGGTGTAAATCGCTCAATAAGCAGATGTGGATGTGTCGTCCTCGACTGTCGTCAGTATTATTTGACGGGACTGAAGGATGGCAGCAAAGGAGGATCTCTACTCAAAGATAATTCCGCGCAGACTGAGACAGAACAGTTGCGTCTCGGTCAAACATGGATCCAATCTGGACGTGCTGCTTTCGATGGGATTTCCTCAGCAGAGAGCACTGAAAGCTCTGGCATCAACTGGAGGCAGAAGTGTTCAGCTTGCGTGTGACTGGCTTTTCTCTCACTTGGATGACCCTTTCCTGGATGACCCTTTGCCCAGAGAGTATGTGCTGTATCTGCGCCCAAGCGGGCCTTTACAAAACCAGCTTTCTCATTTCTGGCAGCAGTCTCGCTTGACTTGTGGAAAAAACAAAGCTCACAACATATTCCCACACATCACACTCTGCCAGTTCTTTATGTGTCCAGACAATAAACTAGTGGCTCTGTGCGAAGCTCTGCAGTCTGCAGTGAATCAATGGAGAGGACGCTTCCCCAGTCCTCTGCCCCTAGAGCTCTACACCTCCACCAACTTCATAGGCCTCTTCGTGGAGGAGCAGGTGGCTGAGACGCTGAAGAAGTTTGCGGCTGACTTCGCGGTGGAGGCTGCAGCTAAAGCTGATGTTCATGTGGAACCCCATAAAAAGCAGCTTCATTTGACTCTAGCCTATCACTTCCCAACCAATCATTATTCCATCTTGGAAAAGTTGGCGCGAGGGATTGAAGTCAAGCTGGGTTGTGATTGGCTCGCTGCTCTCTTCTCACGAGACATACGATTTTCAAATCATGAGAGTTTGCGTGTGATGTACCCCTACACTCCTCAGAATGACGATGAGCTGGAACTGGTGCCTGGAGACTTTATCTTCACGTCTACAATGGAGCAAATGAGCACTAGCGAGGGCTGGGTGTACGGCACGTCTCTGGGCACAGGCATCTCTGGCCTGCTGCCTGAGAACTATGTGAACCCTGCTGATGAGTCTGACACGTGGGTCTTTCATGGgtCACACTCCTTCTTTTGTACTTCCCCTTTGGAAAAGGGTTGCAAGGAAAGCAAATCATTGGATGGGCTGCTCAACATTCGATGCTTTGAGAACTCAAAGTTGGGTGAATCTACCATTTTGAGTGTCATTTGCCAACCTATGCAGGTGCTTCGCTCCAACATCCAGTCTCGGACCCCTAAAAGGACCTTGTTTGTATGTCGGCATGGAGAAAGAATGGATGTAGTGTTTGGGAAACACTGGCTCTCACAGTGTTCTGACTCTAAAGGTAGGTACGTGAGGAGTAACCTGAATATGCCTGCTGTACTACCTGCCCGGGGTGGAGCACACAGGGACTATGAAATGGACGCTCCTATCACAGTGGTTGGAGCTACACAGTCTAAGATTGTGGGTGAGGCTATGCTGGAAAGCAATACCACTATTGATTTTGTGTACTGCTCACCCAGCCTCCGATGTGTCCAGACAGCTCATGAAATCCTCAGAGGAATGCAGCAAGATGGCAGAATAAGCATTCGAGTGGAGCCTGGACTTTTCGAGTGGACAAAATGGGTGTCAGGAACATCTTTGCCTGCTTGGATACCCCCCACAGATCTTGCTGCAGCCAACCTTAATGTAGATACAACATATAGACCTCACATCCCCATTAGCAAACTAACCGTTTCGGAGGCATATGATACGTACATTAGCCGCAGCCAACAGGTGACCAAAGACATCTTGGCATACTGCAAAAATAAGGgaaaaaatattctatttgtGGGACATGCTTCATCTTTGGAGGCCTGTACTCGCCAGATCCAGGGCCTTTCTCCTCAGAACCCTAAGGATTTTGTGCAAGTAGTCCGAAAGATTCCATACCTGGGTCTGTGTGCCAGTGAAGAGCAGGGGGACTCAGGTATCTGGCAGTTAGTGGACCCACCAATTCTTCCTTTAACTCACGGGCCCAACCACAGCTTCAGCTGGAGAGAGACTTTACAGCAAGAATGAGCTTATCTGCAGGGTCTGTCCACATGAGACTGAAATGCTACCTGCACTGGAAGCACAAAactgagaatattttttaaacagatcTAATCTGTGAAATACAGATTTAAgttatgcaaatgcaaaaatatgggATGCGACAGAGTTTTTGTTTGCAGGTGGGCTGAGGAGGCCGCACTGAATAATGAACATTTGTGATAATGTTTACAGAGCCTTTAAAAGGCTTTCTCAGGGCATCGGCTATCATTTTTAACAAGTGAAAATGCACAGTGGCATAATGCAGCACTTATCGTAAAGATTAAAGATCACTTCCTGCAATGCAAATATGTACAATTTTGCAATGAGATGTTAAACAACTTAAAGGCAATGATGTCTTAATCTCTTGCAAATGtaatttgaatgcataaaaagtgtatttgtttTAGCATAGCTGAATGGATATCAGATGTATTTGTAATATCTTTAAATCAAAGctgaaatgtgtaattattcaaataaaaaaaaaaaaatacttttttaaaaa

Function

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156446 lncRNA upstream 22552 12318283 ~ 12382285 (+) True G105908
TU156455 lncRNA upstream 23124 12366246 ~ 12381713 (+) False G105910
TU156456 lncRNA upstream 23124 12376679 ~ 12381713 (+) True G105910
TU156502 lncRNA upstream 36820 12339627 ~ 12368017 (+) False G105941
TU156445 lncRNA upstream 37700 12338084 ~ 12367137 (+) False G105908
TU156557 lncRNA downstream 120220 12538531 ~ 12539442 (+) True G105987
XR_006252655.1 lncRNA downstream 162053 12580364 ~ 12581802 (+) True LOC122358874
TU156842 lncRNA downstream 319740 12738051 ~ 12741077 (+) True G106161
TU156845 lncRNA downstream 319740 12738051 ~ 12741077 (+) False G106161
TU156859 lncRNA downstream 353484 12771795 ~ 12772070 (+) True G106171
XM_043259394.1 mRNA upstream 144 12397761 ~ 12404693 (+) True LOC122359162
XM_043259395.1 mRNA upstream 144 12397911 ~ 12404693 (+) False LOC122359162
XM_043259407.1 mRNA upstream 7689 12391134 ~ 12397148 (+) False usf1
XM_043258308.1 mRNA downstream 182854 12601165 ~ 12603760 (+) False nkapd1
XM_043258309.1 mRNA downstream 182893 12601204 ~ 12603760 (+) True nkapd1
XM_043259225.1 mRNA downstream 195670 12613981 ~ 12624657 (+) True ppp2r1bb
XM_043259427.1 mRNA downstream 248920 12667231 ~ 12675522 (+) True LOC122359172
XM_043259428.1 mRNA downstream 248920 12667231 ~ 12675522 (+) False LOC122359172
unassigned_transcript_2151 other upstream 584205 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1032910 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 1676442 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 2014237 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 2197385 10204839 ~ 10207452 (+) True G105248
TU156910 other downstream 423866 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 423866 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 423866 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 1498262 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2498194 14916505 ~ 14916883 (+) False tbx4

Expression Profile