RNA id: XM_043259564.1


Basic Information

Item Value
RNA id XM_043259564.1
length 5242
RNA type mRNA
GC content 0.51
exon number 27
gene id zgc:77784
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11655855 ~ 11704963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGACAGTGGCAATGAAAACTGATGTCATTTATAAGGCAAACGGGTATATTTGTAATACACAGGTGTTTGCTAATTACTGATACCCTTGAGCCGGACGGCGATGAATGCGAAGCTGTCGCTTTAAGGTTTGTTTGGGAAGCGCGCTCCGCTCTGAAGCGCCACTCGCCTCATTCCGCTGAACGCCGTCACGCCTGAGCATCTTATTCAAACGCCGTGCGGCGAGCTGAATGGACGAACAGCTTGTGAACTCTGTGCGCCGCATTCAGCGCTTCGGATGACGGACGCCACAGCCGAACGAGCGACCGAGCGGACGAGCAAACTAGTTAGACGCCGAGTCGCCATGCAGTCCCTAATGCAAAGATCCGCGCGTTTCGGATCCAGGCGTCCCTGAGACTTTATCGTAATGTGCCGGCGCGGATTTCTCCGTGAGAGCAGCTGAAGTGCTTTTTCcgctcatttttatttcatgagtTCAAACTGGTTCGCGTTCGCCTGCCACGCACCGATGAGAGCGTCTTTTGTTTAGAAATCGCACACTTATGCCGTAAAGAAAAAAGCGCAAGTCTTGTTGGAAGCCGGGCAAATGGCTTTTACTGTCATAGGAACCCTGTTACTGATGCTCTCGAACATCTATAGCTCTTCAGGGTCCCGCCCACGTTTGGATGATGTTCCCCCCAGGATAGTGGAGGATCCTTCTGATCTGGTTGTGTCAAAGGGTGAGCCGGCCACCCTGAACTGCAAGGCAGAGGGTCGACCCATGCCCACAGTGGAGTGGTATAAAGACGGCGAGCACGTTGAAACCGATAAGGATGACCCTCGCTCTCACCGCATGCTTTTGCCCAGCGGCTCCCTTTTTTTCCTGCGCATCGTTCACGGACGCCGCAGCAAACCTGACGAGGGAGTTTACACTTGCGTTGCCCGCAATTACCTAGGAGAGGCTGTTAGTCGAAACGCCTCGCTGGAAGTTGCCATTCTCAGGGATGATTTCCGCCAGCCTCCCAATGATGTGGTGGTGGCAGCAGGAGAGCCCGCTGTGCTGGAGTGCGTCCCTCCCAGGGGTCATCCCGAGCCCACCGTTTCCTGGAAGAGGAACAATGTTCGTGTCAATGACAAGGACGGCAGGATCTCTatgcgAGGTGGTAAGCTGATGATTTCTCACACCCGAAAAAATGACGCAGGCATGTACGTGTGCGTAGGCACCAATATGGTGGGCGAGAGAGACAGCGATCCGGCCGAACTGGTTGTGTTTGAGAGGCCAGTGTTCATCCGCAGACCCGTGAATCAGATTGTTTTGGCTGAGGAGACTGTTGACTTCTTGTGCGAGGTTCATGGGGACCCGGCTCCAACCGTCCGCTGGAACAGAGACGAAGGAGAACTACCGAGGGGGAGATTTGAGATCCGTGGTGACAACAGCCTGCGCCTGGTAAGGGTCAGAGCAGAGGATGAGGGCACTTACACGTGTGTCACAGAAAACAGCGTGGGCAAAACCGAAGCCTCCGCCGTGCTGCAGGTCCACGTGCCCCCACAGATTGATGTACGCCCTCAGGATCAAGTCGCTGTCCAAGGACGGACTGTCACTTTTCAATGTGGCACCCAGGGAAACCCTCTTCCAGCAGTTTTCTGGCAGAAAGAAGGGAGTCAGATGCTGCTTTTCCCCGGCCAACCTCCTTCCCAGTCGGGCCGTTATTCTGTGTCCATGAGCGGAGAGCTGTCCATCTCTGATGTTCACTCGGAGGACTCCGGCTACTATATCTGCCAGGCGATCAGTGTGGCAGGAAGTGTCCTCGCCAAGGCTCTGCTGGAAGTGGAAACTGGCCCATCAGATCTCGTCCCTCCAATTATCCGACAGGGCCCAGCCAACCAGACGCTCGCTTTAGGCTCCAGCGCCCTACTCCAGTGCCATGTGATGGGCAGCCCAATCCCCAGCGTCAGGTGGGAGAAGGACGGGCAAAGCGTTCTGAGCGATGACATTCACATAAGCCTAATGGAAAACGGCACTTTACACATCAGCGGCTTGAAGGAGACCGACTCAGGGACGTACACCTGTGTCGCATCCAGTTCTACTGGTGAGACGAGTTGGAGTGGGACCGTGACAGTGAGAGCGACTGGAACGTCCTCCGTCCCGCGGGTCTCGCAGTCCCTTCAGCTGCCTGGGCCTCCTCAGAAGCCCGTGGTGACAGATGTGACCTCAAATAGCGTCACCCTGACCTGGCAGCCCAACCCACATGAGGGCGGAGCTGCTGTCACTTCCTACATCATCGAGGCTTTCAGTCAGTCTGTGGGCAGCACATGGCAGACTGTAGCTGATCTCGTGAGGCTAGAGAAGCACACAGTGTCCGGGCTTTACCCCAATACTGTGTACCTTTTCATCATCCGAGCGGTTAACTCCTACGGCCTGAGTGACCCCAGCCCCATCTCAGAGCCAGTCCGAACACAAGaCGGTCCTGAAGGTCAGGGGAAAGACCAGGCACATGTGCAGATGGATTTAGGAGGGGTCAAGGTTCATCTGCAGACACCCAAAGTCTTGAGCCCTACGAGTGTTCAAATCACATGGACTCTGGACCGTCATCCTCGCTATATTGAAGGTTACAGGCTGTATTACAGGCCTGTGGGGAGTGCATGGATGATCCAGGATGTAAAAGCAGGTCCCCCACACACCGCTGTCCTAACAGATCTACACAGAGGAAAAGAATATGAGTTCAAAATGAGACCGTATTACAACGAGTTTCAGGGGATTGACAGTGAAGTAGCTGTGGTTCGTACTCCTGATGAAGTGCTGAGCGGCACTCCTCAGGGAGTCAGCGTGGTGCAGTTAAGTAACAGTTCAACCGTGCGAGTGTCCTGGCAGCCTCCTCCCCCTGATGTGCCAGAAGAGCTCATACTAGAGTACAGGGTATGGTGTGTAGGAAACGAGTCTCAGCAGATGATCAACAGGAGCGTGGATGGGGATACGCTGTGGGTGCTGTTGGATGGGCTGTTGCCTGAGTCTATGTATCGCGTGCTGGTCGCAGCGGTGACAAGTGCAGGAGTGGGCGCTCATAGCCGACCTGTGTTCATCTTCCTGAAAGTAGCAATAGATCAGTCCTTGTCAGCGGAGAAGGATGATAGTGTCAGCTTATCTGAGCAGATCACAGGGGTGGTCCGTCAGCCAGCTTTCATCGCCGGGATTGGTGTATCATCCTGGATGGTTCTAATGGGTTTCAGCGCCTGGATCTACTGCAGACACAGGAGGAGGAAAGAACTTGGACACTATACTACATCCTTTGCATATACGCCTGCAGttGCACTTTCTCGAGGTGATGGGTCGGATCTTATAAATGGAAGGCCATGTTTGCTGGAGTCCCACTTGGGTAACTACCCTTGGCTGGCTGACTCGTGGCCTACCAGCAACTTCTCTCGAAATGGAAAAGATTCAGTCAACTGCTGTGCAGGCAGACTTGATTCCACAGATCAATACTATAACACTTCAGGATTATCCAATTATCTGAGCCAGAATGGGAAGTACAGCCCGGCCTCTAATGAAGGCGCCATATATTGTACCATTAACCCAGCTGATGCAGATGGCCATGAAGTGTGCAGCTTGTACTCTCAGGGTCCAGACCCATACACCAGCACACCAGTCCTCTCCAAAACTGATCTCTACAGCATAGAGCAGGACCTGGACCAGTGGAGCCTTCAGTCCAGCCACAGCGGAGCAGAATATGCAAAACTTCAGTACCCAAGAGGCGAAAATGCCAAACTGATGAAGCAGAAGTCTCGAGGACAAATCTCGTCACCAACTTGGTCTGACGTGCTGTCCCTGCATTCAGCACAAAACAAGGATGTTCAAAACGCAGACAAAAGACACAGCCCTGAGGAGGATGAAGAGTGGTGTCCTCCGCTGCCTGAGCGATCTTATCTGATTGAGGGTCTGGAGGACGTAGCCACTCTGCCTTTGAGAGGAGAGGAAACCAACAGGGCCACGACCTATAGCCTGCAGTCCACAGCAACTCTCACACCCTCCCCCAGCGAGGAGCAGTACCTGCCGAACCTGCACCATCCAGACCTGCTGCCacgGAAAGCACAGTGCGCACACAATGCACAGTTTGCTCTTTCCAACCCAAAGCCGTTAACCAAGACAGAGTCTCTTAATGGCAGCGTTCCCAACCACAGCGGTCCTTGGAGAGACATTGCTGAAATGGAGGAACTGTTCTCCAACAACACAGGCACAAGAGAATATACATCATTCACGTCTTCGATTCAGAAGCCCAGGCCTAATAAGAAATCTCAAAAGGATGGCCTTGCGAGACGTGAAGTGTTGAAACCTGGGAGTAAGAACCCACAGAACCTGCCTCCTCCACCTGAGCCTCCTCCTGTAACGGAGGACCCTCTCAAACACCTGACAGACACACTGGACAACGGCGGGAGCAGGACGCCCCcacaacacagagagagaagatcAGACCGCAGAACAGCTGCACAGTGGAGCACACAAGATGAAGATTTAATCCAGTATTTAAAAGCGAACCTGCTGCCCAGCGGTCAGATGTCCAGCCACTGTTCCCTCTCCAGAAGCTCTGCCTCTCAGTCCTCCGCAACCTCGCGTTCCTTGGGGGCAGGAAGGAGGAGAAACGAGAACATGATATGAGGAGAGGAAGTAGTCCCGTTGTTCGCCACTCGACATACGCCATGCAGTGTATATGCCTCCATGCCCTGgtcctgcactttttttttcgtCCGTCATTTTAGTCTAggtatttttttagaaatgttttttaaatgatccatTGTTGTCCTAcctctgtatgtatatatttttacaatgtttctgtgtaaggaaaaaacattttatttattattattatttattgtatttattaatttaaaagaaaatctaatgtttcaaaaaatgtttagatgAACATGATGTTTGAATGTATCTGGCGTATACATGTACGCCTCAATGTCTACATGTAATAAAAAGGTGtttcaacatttttgtgaaaagtatAGCAGATATTATCAGGCAGAGTCTATGTGAACAAACCATCCGATGATACATTAGTAAGCCTATAGAATACCAAATGTTTCTTGTCGTAAATCCACACTATGACTGTCTCCTTGCTATCCTGTGCTCActgaaaggtttttcttttctcctggAGAATTATTCACGCCATGTCAGACTGTTTTCCACTAATGCATCAATCAAACGCAGTTTGGATTGCATACAAAACTCAATAAAACTCATGTTCTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156043 lncRNA upstream 99557 11555878 ~ 11556298 (+) True G105650
XR_006252604.1 lncRNA upstream 178316 11474428 ~ 11477539 (+) True LOC122358459
TU156019 lncRNA upstream 316922 11338265 ~ 11338933 (+) True G105628
TU156014 lncRNA upstream 324555 11330420 ~ 11331300 (+) True G105623
TU156012 lncRNA upstream 325535 11329925 ~ 11330320 (+) True G105622
TU156177 lncRNA downstream 21584 11726547 ~ 11729150 (+) True G105730
TU156192 lncRNA downstream 48564 11753527 ~ 11755519 (+) True G105736
TU156198 lncRNA downstream 57432 11762395 ~ 11762689 (+) True G105739
TU156322 lncRNA downstream 196388 11901351 ~ 11903829 (+) True G105819
TU156363 lncRNA downstream 322632 12027595 ~ 12030475 (+) False LOC122358755
XM_043259967.1 mRNA upstream 76216 11575570 ~ 11579639 (+) True acad8
XM_043259586.1 mRNA upstream 82407 11567390 ~ 11573448 (+) True vps26b
XM_043258213.1 mRNA upstream 89838 11558013 ~ 11566017 (+) True jam3a
XM_043259947.1 mRNA upstream 276425 11377405 ~ 11379430 (+) True LOC122359584
XM_043258505.1 mRNA upstream 283164 11370248 ~ 11372691 (+) True LOC122358628
XM_043259707.1 mRNA downstream 6542 11711505 ~ 11713995 (+) True lim2.3
XM_043258945.1 mRNA downstream 13964 11718927 ~ 11725866 (+) True si:dkey-4p15.5
XM_043258946.1 mRNA downstream 13964 11718927 ~ 11725866 (+) False si:dkey-4p15.5
XM_043259785.1 mRNA downstream 61700 11766663 ~ 11772646 (+) True zpld1b
XM_043258378.1 mRNA downstream 70907 11775870 ~ 11779693 (+) True si:ch211-229d2.5
TU156035 other upstream 283928 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 927460 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1265255 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1448403 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1545414 10093655 ~ 10110441 (+) False ypel2b
unassigned_transcript_2151 other downstream 115598 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1137214 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1137214 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1137214 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 2211610 13916573 ~ 13917262 (+) True G106376

Expression Profile