RNA id: XM_043259586.1


Basic Information

Item Value
RNA id XM_043259586.1
length 2180
RNA type mRNA
GC content 0.43
exon number 7
gene id vps26b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11567390 ~ 11573448 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGGAAGTGCGGGAGTTGTTTTACGGGCAAATATCCTTCCTGACTGCGGTCCTGCTGTAAATTAAAGCTACTTTAATTAAACCAGACAGAAATATGCATTAGATTTTGAgcgtaatatattatatatctcaACTGAATCGCGCGTGACAAAAAGTCAATTAGCCAATTCGCTTGTTTTTGAAGGCCACTTGTTAAGAGGTAACTATCGGAGCGCTAGGGAACCTGTAGCTGCTGTCAATCAGGTGATCTATGATCGTACGGCACTGAGACCGACACTCGTCCATCAGACATGAGCTTCTTCGGCTTCGGACAGACCGCTGAGATCGACATTGTGTTGAACGACGCCGAGACCAGGAAGAAAGCGGAGCACAAAACCGAAGACGAAAAGGACAAATATTTCCTTTTCTACGATGGCGAAACTGTCAGTGGGAAAGTtaacgtgacactgaagactccCGGCAAAAGGCTGGAGCACTACGGGATCAAAATCGAGTTCGTCGGACAGATAGAGCTGTACTATGACAGAGGAAACCACCACGAGTTCGTGTCGTTAGTGAAGGATCTTGCGCGACCCGGTGAGCTTTCACAGTCCCAGACCTTTGACTTTGAGTTCACCCATGTGGAAAAGCCCTATGAGTCTTACACTGGCCAGAATGTCAAACTGAGATATTTTCTGCGAGCAACAATCAGCAGAAGGCTAAATGATATCAGTAAAGAGATGGATATCGTCGTGCAGACGCTGTGCACGTATCCAGAGCTCAACTCCTCCATCAAGATGGAAGTAGGAATTGAAGATTGCCTCCATATTGAGTTCGAATACAACAAATCAAGTGAATACCACCTGAGGGACGTTATCGTAGGCAAGATTTACTTCCTCCTTGTGAGGATAAAGATTAAACACATGGAGATCGATATAATAAAACGGGAAACGACTGGAACAGGGCCCAGTGTGTATCACGAAAACGACACCATTGCCAAATATGAGATCATGGACGGGGCGCCGGTGAGAGGCGAATCGATCCCCATCCGCTTGTTTCTTGCCGGCTACGAGCTGACTCCCACCATGAGGGACGTCAACAAGAAGTTCTCAGTGCGCTACTACCTGAACCTAGTCCTTATAGACGAAGAAGAACGACGATACTTCAAACAACAGGAGATCACACTCTGGAGGAAAGGAGACATCGTGAGGAGAAGTATGTCCCAACAGGCCACCATTGCTGCTCAGAGATACGAGGGATCGAACTCTGAAACGGCGTCAGCACAAGCCAAAGAGGAAAGCAACTAGACGCGAGACGCTGCGCTCCCTCGAGATCTCCAACGAACCTTGTTACgtccaaaataatgttttaaaagtctcAAAGGGATCGGTGCGACACGCCATTCTTCGCTTCTTgagatcaaaaatgaaaatcaagcTTGTAATAGGCAGTCTGTGTGTATAgactacaaaatatttttttatttctccttcCAATACTGCACACATTCCCACTATACAGGTGACCAACGGTTTGGAAATTCCAGGCACagcccttttcttttttttttttttttttttttggctgttttcGTGCTTTATGTTTGATTTGTGCCTCGTGAAGTTATAAGGCTCCTTGTTACGCTCAAATTTTGCTCAAGTCACGTACACTGAGAAATCGGAATCTAGCTTCTGTGCTTTGTCCTGTTCAATGAGCCCGAAATGAGATTTACTGTGATCTTTTGTGTTAAATCTAGCGCTTCATGTACTCTTCATAGAGCTCTGCACAGTATTATTCTGTCATTTAGGGTATTACGAATGAAGGCCTCCATAGAAATGTCTAATAAGGGAACTACTAACTAACTtaacatttaagatttttattgattttttttcttttgatctgGTGTCTTAAGTGTTTATTTCCTCTGAATGCGAATCAGCTGAATCACGGCCGGGGCAAGGTTACAGTATTCTCAAGAGAGAAAATCCTTCTTgtgatttgtttgcattttaaggtgaattttccaatttttttccaTGCGTATGTCATTGTATTATACTTAATGTTTGTTTGATAGCTTATTAGCTGTTCAGGGGATGAGGTATGACTATTAACAGCCATGCGACCGTGAACAATTCTGCAAAAGGCTCATTTAATCAGCCctgttgtaataaaaatttACTAACCTCTGCATTCAA

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156043 lncRNA upstream 11092 11555878 ~ 11556298 (+) True G105650
XR_006252604.1 lncRNA upstream 89851 11474428 ~ 11477539 (+) True LOC122358459
TU156019 lncRNA upstream 228457 11338265 ~ 11338933 (+) True G105628
TU156014 lncRNA upstream 236090 11330420 ~ 11331300 (+) True G105623
TU156012 lncRNA upstream 237070 11329925 ~ 11330320 (+) True G105622
TU156177 lncRNA downstream 153099 11726547 ~ 11729150 (+) True G105730
TU156192 lncRNA downstream 180079 11753527 ~ 11755519 (+) True G105736
TU156198 lncRNA downstream 188947 11762395 ~ 11762689 (+) True G105739
TU156322 lncRNA downstream 327903 11901351 ~ 11903829 (+) True G105819
TU156363 lncRNA downstream 454147 12027595 ~ 12030475 (+) False LOC122358755
XM_043258213.1 mRNA upstream 1373 11558013 ~ 11566017 (+) True jam3a
XM_043259947.1 mRNA upstream 187960 11377405 ~ 11379430 (+) True LOC122359584
XM_043258505.1 mRNA upstream 194699 11370248 ~ 11372691 (+) True LOC122358628
XM_043258280.1 mRNA upstream 269670 11291353 ~ 11297720 (+) True LOC122358473
XM_043258281.1 mRNA upstream 269670 11291353 ~ 11297720 (+) False LOC122358473
XM_043259967.1 mRNA downstream 2122 11575570 ~ 11579639 (+) True acad8
XM_043259564.1 mRNA downstream 82407 11655855 ~ 11704963 (+) False zgc:77784
XM_043259562.1 mRNA downstream 82408 11655856 ~ 11704963 (+) True zgc:77784
XM_043259566.1 mRNA downstream 82409 11655857 ~ 11704963 (+) False zgc:77784
XM_043259563.1 mRNA downstream 82411 11655859 ~ 11704963 (+) False zgc:77784
TU156035 other upstream 195463 11370636 ~ 11371927 (+) False LOC122358628
TU155825 other upstream 838995 10721972 ~ 10728395 (+) True G105513
XR_006252665.1 other upstream 1176790 10353161 ~ 10390600 (+) False snx19b
TU155413 other upstream 1359938 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 1456949 10093655 ~ 10110441 (+) False ypel2b
unassigned_transcript_2151 other downstream 247113 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 1268729 12842177 ~ 12847378 (+) False spa17
TU156912 other downstream 1268729 12842177 ~ 12847378 (+) False spa17
TU156913 other downstream 1268729 12842177 ~ 12847378 (+) False spa17
TU157171 other downstream 2343125 13916573 ~ 13917262 (+) True G106376

Expression Profile