RNA id: XM_043259602.1


Basic Information

Item Value
RNA id XM_043259602.1
length 1180
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122359294
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9429444 ~ 9432324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tccttacccgatgtctgtacctgtgtttatcctgcctgcctgttcgacctgcctATGTGCGCACAATGGCCAGCGTGAACGCCAGCGGCTACGAGCAGATGCAGCTGATCCAAGCTGACCCCGTCCGCAGAAACATTTCACTGGCGCTGACCCAGATCTTCGTGTGGCCCTTCATCTACCTCACCTTCCTCATGCTCTTGATATTCTCCAAGAAAGAGACTTTCAGAACAGAGACGCGTTACATATTGTTCGGCCATTCTCTGCTGGTAGAcctaatgtttctttttctgacagattttgtggtgctgCTATCCTACAACTTCGTTTTAATACCTTTGCACTTCTGTATCCCCGTCTGTATGTTAATGGAAGCGATCACAGCATGTGCGCCGCTGACCATCATAGCCATGTGTGTGGAGCGCTATGTGGCCATTTGCATGCCTCTGCGTCATCAGGCCATCTCCACCTCTAGAAGAGCCCTCATAGTGATTTTAATGATTTGGATCCTGAGCTCCATAAACCCCTTTGTTGACATGTTTATCCTCATTAGCACCGCCTCCCGTGAATACTTGTCTCAGCTGACGCACTGCCACTATGAGATTATGATTCCGGAAAAGATTCGTCACTTTGCTAGGGGTCTGTTGTACATTGTGGGGCTTGTGTTCATTTTGATAATTGAGGTCTTTTGTTATGTAATGATATATCTTGCTGCGCGTGCAGCTTCCGGTGACAATAAGAATTCAGCATCAAAAGGGCAGCGCACTATTTCTCTTCATATCCTTCAGCTGTTTCTGTGTACGGCTGAGGTCATGTGTCCTTATATTGAAGCTGTAGTTATGCAGTATGATATTCAAACATACCTGACTGTCCGGTTTATAAATTTCCTCGCGTTTAGTATCACTTCTAGAGCAGTAAGTCCCCTCGTCTACGGCTTTAGAGATGAGAAATTCTACGCAGCTATGGTTTATTACGTCAGATGCAAAAACAACACCATCTCAACTGACTCAGTTAAACAATCGTGATTatcatttagtacatttttaataattcgaTTAAACTACATGTATTTAATGATTGCATGTGTGATTCTAACGGGcctacatttatatacaaatgtatgtcAAGTTATTCGTATGATGAAACACATTCTTTAGAATAGTTTTGATAGAGTAAATGCATT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155005 lncRNA upstream 36875 9392141 ~ 9392569 (+) True G104974
TU155004 lncRNA upstream 37591 9391457 ~ 9391853 (+) True G104973
TU154960 lncRNA upstream 148975 9273559 ~ 9280469 (+) False LOC122358919
TU154950 lncRNA upstream 179036 9249947 ~ 9250408 (+) True G104937
TU154926 lncRNA upstream 199257 9229959 ~ 9230187 (+) True G104925
TU155043 lncRNA downstream 88395 9520719 ~ 9521110 (+) False camkk1b
TU155049 lncRNA downstream 110042 9542366 ~ 9543202 (+) True G105002
TU155068 lncRNA downstream 237310 9669634 ~ 9673345 (+) False G105011
TU155226 lncRNA downstream 265750 9698074 ~ 9698409 (+) True G105101
TU155228 lncRNA downstream 271102 9703426 ~ 9703649 (+) False dusp14
XM_043259317.1 mRNA upstream 3034 9414951 ~ 9426410 (+) False LOC122359130
XM_043259314.1 mRNA upstream 3034 9418897 ~ 9426410 (+) False LOC122359130
XM_043259316.1 mRNA upstream 3034 9418932 ~ 9426410 (+) False LOC122359130
XM_043259315.1 mRNA upstream 3034 9421549 ~ 9426410 (+) True LOC122359130
XM_043258902.1 mRNA upstream 138040 9288004 ~ 9291404 (+) True b3gnt7
XM_043259767.1 mRNA downstream 2085 9434409 ~ 9436796 (+) True diabloa
XM_043258143.1 mRNA downstream 5692 9438016 ~ 9468883 (+) True nectin3a
XM_043259349.1 mRNA downstream 52279 9484603 ~ 9494052 (+) False si:ch211-149e23.4
XM_043259347.1 mRNA downstream 52280 9484604 ~ 9494052 (+) True si:ch211-149e23.4
XM_043259348.1 mRNA downstream 52280 9484604 ~ 9494052 (+) False si:ch211-149e23.4
TU154361 other upstream 672337 8756327 ~ 8757107 (+) False LOC122358603
TU154357 other upstream 680868 8747855 ~ 8748576 (+) False LOC122358602
TU154346 other upstream 796022 8632341 ~ 8633422 (+) False LOC122358505
TU154273 other upstream 1011980 8401311 ~ 8417464 (+) True G104466
TU155045 other downstream 89343 9521667 ~ 9523608 (+) False camkk1b
XR_006252679.1 other downstream 117428 9549752 ~ 9552128 (+) True dhrs11b.1
unassigned_transcript_2148 other downstream 142185 9574509 ~ 9574582 (+) True trnat-agu_66
unassigned_transcript_2149 other downstream 142531 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252680.1 other downstream 156465 9588789 ~ 9623972 (+) False traf4a

Expression Profile