RNA id: XM_043259670.1


Basic Information

Item Value
RNA id XM_043259670.1
length 6879
RNA type mRNA
GC content 0.49
exon number 34
gene id c2cd3
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9501435 ~ 9515858 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCCGTTGCTCAGCGGTATTATGTTTGTTAATGCAACTGTCAACAGAGTATGTTAGCTTTGCttcattaataacattattaagtACACTCTCGATGTGAGGAATGAAGAATAAAAAGGCGAAACCCTCAAAGGGTGTAAGCAACAGAAAATTAGTGCTCAGTGATGTGACTCCATCCACCAGCATCCCTCCTCTGGTGGAGGGTCAGCTGAGGTGTTTTCTGAGAGTGACGGTGAGTAAAGTGCTGTGGACCATCACCAGACCTCCTCCTGTGACTCTGATCAGGCTCAGATGGTGGGGAGAGTCATCTCATGGCACCTTCTTCAGGCCCAGAGATGGGCACGGTGAACAGAAAGGGATCAAATCGACAGCCCGCTTTCCAGTTCGATGTGGGCCCAAACAGTTGACGTCTTATTTGACAGATATGGGCTCATTGGTGCTGGATGTGCTTACAAAGGTTAATCATCTGCCCATAGCTCGAGCTCAAATCCCCGGGATTGCCCGACTTTCTCTGTCTCACTCCATAAATGGATATTTCACTCTTGTTTCCCCATCATCAGAAAAACTTGGAGAGCTACAGGTCACACTTGTACTGGAAGCGTTAACTGAGGGATACGACAGCAGTAGTTCAGTTCCCACAACCGATATGAGCCTCGACGTACGGGCTCCTGGAGTAACACCTGACCACAACATGTCTGTACATTCATCCCTGGATCGGGCTCTCCCAAGTGTGAAGGAGACAGCTGGCAGCAGCTCTGGCTACATGCCtagAGGAAAGGATTACTTGTATTTTCAAGAAAACAATAACGTCATACCGGATTCTTCTACTGGAAAACATAAACCTGGTACTGCCCAAACTCTTTCAGCAAATATCCACACACCTGTTGACCTTTTGTCAGTTCTTCTGGAGCGTGGCAGCAAACTGAGAAATGCTATGGTGGTTTCAGCCTTGAAATCCGATGTGGCATCAGATGTTCCTCTGAAGGACATTCCCCTGCCTCTCTCCAAAGACAACACTGATGCCTTGCCAGCCAGGCCCTCATCGGGACAGTTTCTGGAGAACATCCTTCAAGCAGAACACCAGCATCCTGTTCAGGACCTCGAAGAGCCAAGTGAAAATAGAGTCACAGAGGACATGGCTGTGGATCTGCTGCTGGGAAGTGTTAGTGGATCAGTGCTGCAGTTCTGGGATGGAGAGGGTTCTTTCCCAGATTCTCTTTCTGGTCACAGTAGTGTGCTCATGGACAGTGAACTTAACGACCCTCAGTATGATCAGAGTCTTCTGGAGAACCTCTTCTACAAAGCTCCTatgtcaGATGAATGCTTGGAAGAGGAGCATCAAAAGAAAGATCCAGGAGAGAAGCCAGTTCACATAAGACCAACTAAATATGCCCAGCTTGATTCTGAAGATGTCCAGCATTCAGAAGCAGGAGATGATTTCTCTGGACTTAGCATGGATAAAATATCCCTGCTTGGAGATATTCGTTTTGCCAGGGCCACCATCATCGAGTTAAAAATTTCCACTGAGAGTATTTCAAGAAGCCTCTCTAAAAAAGGAAGACCACCTCGCCCCCTCAACACAAAGAAATGCTTTTATATCGTAGAGTACCTCTTTCCACTGGTCTCTGCTGGGTTTGAGGATGTTCAGCTTGTACCTTCAGAGATTACAAAAGTTGTCTCTAGTAAAGTAACAGAGGGCGtcGTGACGTTTCAGCACCAAAGTTTGTTTCCTGTGAGGTTCAGTAGGTCATCTATTAAACAATGGTGGGAGATGAACGTCACATTCAACATCTACTCCAGAAATAGCCTTCAAAAGACAcccatTCTCATTGGATCAGCAATGTTTCCACTGAGCTCCCTGATGCAGAGTGAATCGCTGAGCATTTCTGCTGTCCTTCCTGTTCAAAAAACAGATGGAAACACTGATAAACAAGCAGTTGGTCCCCTGAAGgtgtcatttgAATTAGCAGCAGACAAAAATGATTTCTCCACCAAAAAGAGACCTGCGAAACGAATGCTAAGTCCGACAAGACCTCCCCCTTGTCATTTAACTGAAGAGCATGATGGGCCGAAGGGTTTATGTGTGACTGATCACAGGAGAGACCCATCTCCTAGTGCAAGCGTTTATCAAGTCCAGAGTATCCTGATACCTCCAACCAGATCACGATCCACATCACCACGTGTCAGATACCAGAGCTCTCTTCATGAGCCTCTGCAGCAGGAAGTAGAGGAGGAGACTGAGATTTTGCTTCATATGTTGCTCATGGTGCCCGATGGGAAAGATTTTAACTGTGCACCTATGCAGCCTAACATCTACTTGAACTGTAAGCTCCTCGGGTCAGATGAAACCGCTCGGTCGGCGGTGAGCTGGCGTCAAAAACATCCATCATTCGGCTTTATCCAGGTGGCTCCAGTCACACTGACCAGCAAACTGCTGGAGAGAATGAAGAACAACATGATGGTCATTGAAGTTTGGTTGAGGGCCAGTAGTTCAGACAATGATAAACTTCTTGGTTTGGTAAAACTACCTCTTAACCAGTTCTACATGTCCTTCAGAGAGCCCAAGATCACAGAGCTGCTCCTGCAGTCTCAGTATCCAGTGGTTGGAGTGGACAGTTTTATGCCAGTGGTTGATGTGTTCAGCGGAAGCACTCGTGGAAACCTCAGGGTGTGTCTAGCGATGGGTTTAGCTCAGCAGATCACGGCACTGCAGCGAATGAGGGACGGCGAGCAGACCCACGAATCACCGCTGCATCGACCAGCGCACATGCTAGACCACCGGCCTCGAGTAGAAACCAAGGCCAGTACCACTCTGGATGTCCTGCGTGAGCATGTCTTCATGGTCCGAGTAGAGCGAGTAAAGGGTCTGACACCTCTGCAGTCCACAGTGTGGGGAGAAGCCGACTGTTACGTCCAGTACTCATTCCCTGCGCAAAATGAGTCGATAGATGACACGGACCCACACGTTGTGGAGAGCaATGTGGAGCTTAAGGCCTACCGCACTGAGACCACTCTCTGCGTGCCTGACCCTGTGTTCGGACATAATGAGACTCATGTCCTGCTGGCTCCTCCTGATGTCCCAGTGCAAAGAATCCTGCTGAGCTCACTGGCCACTCAGGGGCTGAAGAACGGTGGAGGGGTGCAGTTTGAGGTCTGGTGCAGGTATTATTATCCAAATGTCAGAGATCAGCTGGTAGCCAGAGGACTGCTGCCCATGTCCAAACTGTGTGCCATGGTAACCATGCAGAAACAGGGTCAAACCGATGAACAGCTTTTCTCCCTTCCTCTGGTACCAAGAACTGACCGACCTGTTGAAACACAGCCTCAACCCCCTGGGTTGCTTGAAGTGAGCGTTCAGTACAAATCTCGACCAATGAGGAGTGTGGGAGTAAGGAGTGGGGTTGTGCCGACCCGCCGAGTGATACTGGTTGTGCATGTGCATAGAGCGTCCGGGCTACAAGCTCTGGCCAAAGCTCTTGCAGATGCAGACAGCTCACTTCTGTATTACTCTGAAGTGGGGCTCAACTCCTTCATCAGTATGCAGCTGTCCTTTCTGCCGGACAGTGAGATTCGAAGCACGCGTGTGGCTGCTCGAAGTTTCTGCCCGGAGTTTGAACATCATGTCGAGTTCTGCTGTAACCTGCTGGTGCAGAGAAGCAGCGGAGAAAGCGTCAGCCTGGCTGAACTCCTGCAGGAGGCAGTGGCCATCTTCACCATTTACAATAGAGACACACGCAAAATGGCTGATACCACAAGATTGAAGGACACTGTCTTGGGCACTGTGAAAATTAGACTTGCAGATCTGATTCATAAAAGAAGTGGCATATCTGGCTGGTACAGTTTCTCTCTACCTCAGAGCACAGCTCACAGTCTGACCTCAGCAGGAGGCCTTGAAGTCTCCATCAGTTTTTCCCATCATACAGATAGAGAGCGGGTCATCAGTTCAGCCCGTGGACTAGGATGGGACGTGGGCCAAGACAGCGAAGATGAGGCAGATATAGAGGACGAAGATACTTTGGAAGAAAGCGCAAAGTCTTTGGCATTATCATTTTCTGTGCCTAGAGCGTGGCTGCCCATCCATTGCCTGCTGCTGCCAGGACATGAGGAATTACAGCGCTCCACCTACTGCTACTACAGATACAAGCTCTACAACCAGCAGACCTTCTGCTCTGAGCTTAGACATCCCGTTCCAGACGAGAGTGAAGGAGATGAAGGTTTGGCCACGGTGGCATTTCAGGGAAGCAGAAGCGTGGTGCTGAGGAGGACTCAACCCCTGCGCTGGTACCTGAGGGAGGAGAGGATGGAGGTGCAGGTGTGGGTGGCGTTTGGGAAGGAGAAGAGAGCCCGGCCTCATAACGCTGATCGTCTGGTGGGCTCTGCTTTTGTGGATCTCTCTGCTTTTTCTGGGAACTTGAAGCCGCATCAAACTATCAGCGGTGTGTATCCTTTGTTCAAGCGCTCCGCTGTAAACCTGAGCGGTGCTGCTCTCAGAGTCCATATCGCTGTCACAACAGACCCTGCAGCCCATGAGCCTCAAGTCACTGAGGAGCTCAACAGCTCAGTAGAAGATGAGGAGGATGGAGACCTTCCCGCCACAGGGCTGTCAAAACCATCTCAATCCCCCAGAAAAAAGCTGATCAAATCAACCGTGAACACTGATGCTCCACCCTCCAATGAAATCAACGATGAAGACACCTTCATAGCCAACATAACTGTGGACAGAGCCATGCATCTGAGTCTGAAGGGTTGTCCTCTCGCTGAGCGCGGTGGAGGATTGCCTAGTTGCTGTGTTTCATACGCCACAGCTGATGCCCCGGACTCAGTGACCACAGCTCTGATCAAAGACAGCGACTGCCCCGTGTGGGACCACCAACAAGGATGCAGgctGTCGAAGGAGCTACTTTTGGATCCCCAGCAGTCCTTGGTTTTTAAAGTTTGGCATAAAGGAGAAGTCGAGAGGGTGATTGGATTCGTGTCTGTTGACCTGTCGCCACTTCTGTCAGGGTTTCAGTCAGTTTGTGGCTGGTATAACATCACTGATTTCAGCGGGCAGTGTCAGGGGCAGCTGAAGGTGTCCGTGTCTCCTCTGAGGGCAGTACAGGAACTCCGGGCACAAAGACTGCCTGCCCACGAGACCACTGCTCCAGACTCAAGTGCTCTCTTTAGCGCCCTTCCACTTTGCTATCAAACAACGGCTACTTACAGCAGCTTTCCCAGCCACATCAGTCGATTCTCAGAGCAGAGGATCAACACACCGCCTGAACAGTTTGAAAGACTGCTCTCTGACAGGTCCAGTGCGACGGATCGCCACGATGAGCACATGGACAACATAAGACTGTTCCATCAGAGTTTGCATGAGGAAGAGAACGTGTCCCAGTCCTCCTTAGTTGGAGATTCCCACCCATCCAGTTCAACACTCTTCTCTGCCCTCAGgaAAAACCTCAGTGAACTGGATGATATTCAGAGGTATTTCAGCCGAAAGTTGTCCACTCCAGCATTCCCGAAACTGAATGAGCTGAGAGGAACCTCCGGGCTGGACGAGCACAGAGACTCAGAAGCGGACACCACTCAACTGCTGCTGAAGTCCAGTCAACTGGTGGGAGAGGTCAATAACATCATAAAAGgTTTAAGTGAATACCCGACAGAAGAGGCGACAGCTCCTCATAGAAGCTCTGCTGCTCTTGATGTGGTTGAGGAGCGCTTAACATCTGGAATAGATCAGCTGATTTTATCAGAGTCTGATAGCTGTGAGAAAGAGCCACGCTTTCATAAAGAATCAGACATGACGTcggaagatgaagatgaagtcTCCCCCATCAGCTCTCCTGCTCCTGCACAGTTCAGACAGTCACCAGCCGCTGCTGAAGGTGAAAAGATCTACCACAGCTCCAGCGAGCACTCGTCTGATGAAGAGGAAGACGAGGACGAGCATGAAGACTTTGAGGAAACTTTAATACAGCCTCGAACTCTTAATGAGGTCACTTCAGTCACAGACAGAACCAGCCCTTGGACCAGCCTACTGTCTGACCCAGATATGGGATCCCTGGAGAGTCTGGAGTCAGTGCAGCATCACGCTCACGACGACGCCATCCACACTCACAGAGAGGAAAGAAGCAGCAGAGAAATCCTTCCAGATTTTAACCAGCAGACATTGACCGCAGAATTGCAAACCGTTGATTCTGATTCAGATATCTGTGATGGATCTGAAACCGATCTTGATACACGTAGGAGTGAATGCGCTATTGCTACAGATCATCGGGAACAGCAGCCCTCTCCAGATGGTCTGGATGGAGATGGTCCTCTTTCTAGTATTAGTGAGGTGGAAGATTATGAACAAAGTAATAGCGGACCTGAAGAAAGCGATGAGAGGCCAAACGCGCCTCCCTCAGGAGAGTCTGGTTCTGAAGCAGATGATAGGACAGCAGAACCTTTAGAATCTGTAGAGATTCCAAATTTCTTCCTGTCCGCTCACCATCTGGAGGCGTCCATGAGGGCTTTGAGGATGGCGCCTGTCTTTCCATCGGCAGCAGCTGAGTCTGAAACCGTAAATCCTGGAAATCCATATAGAAGAATGCCTCGAACGAGACCAAGCGTCCCTCCATCACAGAGAAGTGAAGAGACTAGAAGAATTGCGAAAATATTTGCTTCCAAGTTTACAGAAGAACGTTAATGCTTTCGTTCTagatttctgtttgtttgtttgtttgtttgtttgtttgtttgttttatgtttaaagtaTGGGATCCTTATTTATTTCTTACCTGATGCAATAtgttatatacttttttttaacagtaattttaataatgcaagcattaaaaaaggttttttatttgcagtaaTGAACCTATTTTTCTAATAAAGAATTTTGTATTTC

Function

GO: NA

KEGG:

id description
K16751 C2CD3; C2 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155005 lncRNA upstream 108866 9392141 ~ 9392569 (+) True G104974
TU155004 lncRNA upstream 109582 9391457 ~ 9391853 (+) True G104973
TU154960 lncRNA upstream 220966 9273559 ~ 9280469 (+) False LOC122358919
TU154950 lncRNA upstream 251027 9249947 ~ 9250408 (+) True G104937
TU154926 lncRNA upstream 271248 9229959 ~ 9230187 (+) True G104925
TU155043 lncRNA downstream 4861 9520719 ~ 9521110 (+) False camkk1b
TU155049 lncRNA downstream 26508 9542366 ~ 9543202 (+) True G105002
TU155068 lncRNA downstream 153776 9669634 ~ 9673345 (+) False G105011
TU155226 lncRNA downstream 182216 9698074 ~ 9698409 (+) True G105101
TU155228 lncRNA downstream 187568 9703426 ~ 9703649 (+) False dusp14
XM_043258310.1 mRNA upstream 785 9499090 ~ 9500650 (+) True med29
XM_043259349.1 mRNA upstream 7383 9484603 ~ 9494052 (+) False si:ch211-149e23.4
XM_043259347.1 mRNA upstream 7383 9484604 ~ 9494052 (+) True si:ch211-149e23.4
XM_043259348.1 mRNA upstream 7383 9484604 ~ 9494052 (+) False si:ch211-149e23.4
XM_043258143.1 mRNA upstream 32552 9438016 ~ 9468883 (+) True nectin3a
XM_043259671.1 mRNA downstream 97 9515955 ~ 9523974 (+) True camkk1b
XM_043259673.1 mRNA downstream 97 9515955 ~ 9523974 (+) False camkk1b
XM_043259672.1 mRNA downstream 3701 9519559 ~ 9523974 (+) False camkk1b
XM_043259239.1 mRNA downstream 21256 9537114 ~ 9539923 (+) True si:ch211-105f12.2
XM_043259163.1 mRNA downstream 30099 9545957 ~ 9549061 (+) True ca4b
TU154361 other upstream 744328 8756327 ~ 8757107 (+) False LOC122358603
TU154357 other upstream 752859 8747855 ~ 8748576 (+) False LOC122358602
TU154346 other upstream 868013 8632341 ~ 8633422 (+) False LOC122358505
TU154273 other upstream 1083971 8401311 ~ 8417464 (+) True G104466
TU155045 other downstream 5809 9521667 ~ 9523608 (+) False camkk1b
XR_006252679.1 other downstream 33894 9549752 ~ 9552128 (+) True dhrs11b.1
unassigned_transcript_2148 other downstream 58651 9574509 ~ 9574582 (+) True trnat-agu_66
unassigned_transcript_2149 other downstream 58997 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252680.1 other downstream 72931 9588789 ~ 9623972 (+) False traf4a

Expression Profile