RNA id: XM_043259716.1


Basic Information

Item Value
RNA id XM_043259716.1
length 963
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC122359423
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17252396 ~ 17253358 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGTGGGAAACGTCAGCTTCATAAAGGATTTTGTAATAATTGGCTTTCCTGGACTTCAGCCTCATTACTATGGACTTGTATCAGCACTcctattttttgtttatgtatttacattggttggaaatgctttattttttatgctgtttGTAACTACCAAGAGCCTTCAGAAACctgtttactattttattataaatctaGTTGTATGTGATGTGCTATTTAGCACCACAACATTACCGAAAATAATCAGCAGGTATTGGTTTCAAGATGGAACCATTTCATTCTTGGGTTGTTTTGTTCAGATgttctttgtgcattttttcgGCAGTGTCTGTTCAGTTATTCTGGCTGTAATTGCTATAGACCGCTATGCAGCAATTTGTTACCCGCTTCAATATCACAGCATCATGACAAACCAAAATGTACTCATTCTGTTCTTTGGCTCTTGGATTTTGGGTTTGCTAGGCCCTGTAGCAATGGTCATTCGAGCTTACCCTCTCCCTTACTGTGCAGAAAATACAATTATGCACTGTTACTGTGATCACGTTTCCATCACAACACTGGCATGCACAGACAGATCACTATATAGTATTCCAGCTCTCATCTATGCCTTTGCAATTCTGTTGGTGCCCTTTGCTGTTATTATATTCTCTTACTGTTCTATCTTTGTAGCAGTTATGCGGATTTCAGGTACTCAAGGAAAGATGAAGACTTTCTCTACATGCAGTCCTCAGCTTATCATAATTGTTCTCTTTTTCCTACCCAGgttgtttaattatttgtctGGAAACATTGGTATAAAGTTCAGCACTGATTTGCGCTTAGTAATCATTATGATGTATAGCTTGTTGCCGCCAATGATCAACCCCCTTATTTACTGTTTGAGAACAGAAGAGGTCAAAAAGTTACTCAGTAGACATCTTCCAAAGAAACAAGTTGGTATTCCTTTACGATCGATCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158696 lncRNA upstream 51459 17200408 ~ 17200937 (+) True G107443
TU158686 lncRNA upstream 52783 17198455 ~ 17199613 (+) True G107440
TU158688 lncRNA upstream 52783 17198753 ~ 17199613 (+) False G107440
TU158683 lncRNA upstream 54066 17196154 ~ 17198330 (+) True G107438
TU158681 lncRNA upstream 56511 17195503 ~ 17195885 (+) True G107437
TU158701 lncRNA downstream 55987 17309345 ~ 17314661 (+) True G107447
TU158706 lncRNA downstream 200936 17454294 ~ 17457686 (+) True G107450
TU158729 lncRNA downstream 226490 17479848 ~ 17480048 (+) True G107468
TU158739 lncRNA downstream 312835 17566193 ~ 17566876 (+) True G107477
TU158831 lncRNA downstream 556975 17810333 ~ 17811203 (+) False trim3a
XM_043259567.1 mRNA upstream 12051 17239332 ~ 17240345 (+) True LOC122359258
XM_043259550.1 mRNA upstream 18789 17232591 ~ 17233607 (+) True LOC122359245
XM_043259557.1 mRNA upstream 22254 17229126 ~ 17230142 (+) True LOC122359253
XM_043258350.1 mRNA upstream 25302 17226111 ~ 17227094 (+) True LOC122358512
XM_043258528.1 mRNA upstream 40867 17210540 ~ 17211529 (+) True LOC122358664
XM_043259729.1 mRNA downstream 5515 17258873 ~ 17259838 (+) True LOC122359433
XM_043259538.1 mRNA downstream 8037 17261395 ~ 17262358 (+) True LOC122359229
XM_043258177.1 mRNA downstream 42641 17295999 ~ 17296934 (+) True LOC122358385
XM_043258531.1 mRNA downstream 115740 17369098 ~ 17370108 (+) True LOC122358671
XM_043258532.1 mRNA downstream 119785 17373143 ~ 17374153 (+) True LOC122358673
TU158422 other upstream 738236 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1016055 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1209131 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1209131 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1368886 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 578714 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 606553 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 791659 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 791659 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1502985 18756343 ~ 18758836 (+) True G107756