RNA id: XM_043259754.1


Basic Information

Item Value
RNA id XM_043259754.1
length 2483
RNA type mRNA
GC content 0.49
exon number 4
gene id oafa
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12883017 ~ 12896981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATAATGAAGGAAGTGACGAATCCGCAATactaggagagagagagagagagagagagagagagagagagagggaaaaaaaactccagaagagaaaaacagaaagtaaGGTTGAAGTCAGCGTGAAGCGCGCTGTAGTGAATGAAGTCGAGTCTGCAGAAGCTCGCGAATCAAAGTTCCCTCAATGAGAGACGCGACACGAGTGCAAACACCAGATTGATCCGTGCGTGACGCGGCTCtcccaaatgtttatttaccaAACGTGAGCAGTCTCTACACCCGTTTCACAGGACTTTATGAATTCTCTCGTGTCTCCAGCTTCCGAGAAACACGGGTGAAGTTGTGAGAGCGGGGCCGCTGTGATGTTTTGCGGGGATCCGTCCGAAGAGTCTCGCGGAATGAGTCCGACCGCGTCGGCGGCTGTTATTCCCGTGGATTCTCCTTCTGAGCTCGCCTTTTGAGTTTTAGGACTGTCTGGAATGTTTGCGAGGCGGATTTCGCCGGGTTTAGTTCGGTTGACTGTTTTGCTTGGGCTGCTCGCGGCGTCTGTAACTCTCGGGTCTGCTTCGGAGCTGAAGGTGAGGGTTCGTCTGGCCGATGGACAGATCGCAGATGAACTTTTGGAGGCGGACAGCGAGAAAGACTCCATCACTGTGGAGTTTAAACAGGGAGACGGGACTCTTATAACTTTCGTGGCCGATTTCAAGCAGGATGTGAAGATCTTCCGGGCGCTGATCCTGGGAGAGCTGGAGAGAGGGCAGAGCCAGTACCAGGCGCTCTGCTTCATCACACGGCTCAGCCACAATGAGATCATCCCCAGCGAGTCCATGGCCAGACTCCGACAGAAAAATCCCCAGGCCATCCGCACAGCAGAAGAGAAGAGGAGCACGGAAGTGCTGGGCATGAACGTAGCAGTCAATTTGACACGGACGTGGCAGCTGAGCGCCCACATCCACAACATGTGCAGCGTCGCCCGTGAAGCAGTGTACACGCGCGAGGCTGATGTCAGACACTGGCTGGACAGAGGCGTGGAGGGCTCCATGTTCGAGCCTCAAGCCGCGGAGGTGGCAGGCCTGCAGCGCTGCGGGACAGTGAAGGACCTGTGGCAGCCTTGCTCCTGCAGCTATAACCTCAGACTGGAATGGTACCCCTGCCTGCTGAAATACTGCCGCAACAGAGACGTCTCCGGCAAGGGCAGCCCGTATAAATGCGGCATCAAGAGCTGCAGCAAAGGCTACCAGTTTACTTACTACGTGCCCCACAAACAGCTGTGCCTATGGGAGGAAGAGACCTAGAAccacatacgcttctgcaaaaaacatatttaatgtgaCCTTGGCCACCTCCAAGCCTTCAGACTCGTGCCTTCTGCGCGGAGCAGAGATGGTGCTGGGCGGAGCGGGATTTGAGCGGTTTGCCACGTTTTAGAGCTGGTCGGTAGTCTTCAAGCTCTTTACCAGCACTGTGGGATGGAACTGAGACCCAAACGAGTCTGGGATGAGCAACCTGTGAATTAGTACGTATATAGCTGGAtctcgtctttttttttcagaaactggtattatttattttgctgtggGATACGACTGAAGACACGTTTAGAGCGCGGCGCACACGTTTagaaaaaatgtcttttggTAGTTTGCTATTTTTGACTGTTAGCTACAAAACACTGTGGTATAAATGTACGCATGCTTTGATTAATATTGGAACACTCAGAAAACACTATCGAGTCATTGTCTCACCTCAAGTCTTAATGCtgggattttcattttcatcgtCTTGCCTTAACTCCGTTGCACAACAGCAGAAACTTAAGGACCAGTTGGATCGATGCAGTATGGACTCTGGTTAGCTGGGAACAGGCCACACTTCAAAAGTGACTCGAGGAAACCAAAGTAAGTGTAGGCTCTGAGGGACAGAAAGCGTGCCGATGAAATCCTGTCGCTGCTGTGTGTCCAACACTGCCATCTTCTGGCTGCGCTGCGTTACTGTCGCTCAGGCTCCTCCTTTCAGCGTGATCTCAGAACATCAGCAGAGCCCTGAAACCATCGCTAATACGCTGGATTCATTTAACAGGACCAAATCCACAGACCGAGCTCTGTCGTGAAGAAGAGACTCTGTATTGTCGTTTCACACTTCACCACGTTCACCTCTAACCCGCGTCTGGCCTCTCTTACCACGTGAATGTTCGCTTTTTAATACGCCACAGGTGACTCGGTCGCCGTTCATGGTACTAAAATgtttatgctgatttatttaattttgtttcaaagagtttaagtgtttttttttttttttttggagattaCACCTCCCCAAACAACAGCCATTGTCTGGGATACAAGTGCCTTGGTGATTTCAGTGTTTACTGATTGTTTTTAAGGATAAAGCTGGTATGAATAAAGTATCGAAACTATTTTCCTATGAAAATGAATATGAGCATAATATgaagtaattttaaataaaaagctccTTCAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156915 lncRNA upstream 34350 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 34603 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 102642 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 110947 12771795 ~ 12772070 (+) True G106171
TU156845 lncRNA upstream 141940 12738051 ~ 12741077 (+) False G106161
XR_006252599.1 lncRNA downstream 48096 12945077 ~ 12955807 (+) True LOC122358384
TU156962 lncRNA downstream 361255 13258236 ~ 13798248 (+) True G106234
TU157016 lncRNA downstream 438327 13335308 ~ 13336677 (+) True G106276
TU157129 lncRNA downstream 783199 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 795398 13692379 ~ 13692893 (+) True G106354
XM_043258325.1 mRNA upstream 14364 12861778 ~ 12868653 (+) True pde9ac
XM_043258326.1 mRNA upstream 14364 12861778 ~ 12868653 (+) False pde9ac
XM_043259874.1 mRNA upstream 24517 12852856 ~ 12858500 (+) True hepacama
XM_043259875.1 mRNA upstream 35631 12837582 ~ 12847386 (+) True spa17
XM_043259795.1 mRNA upstream 149589 12727956 ~ 12733428 (+) True ankk1
XM_043258193.1 mRNA downstream 1066 12898047 ~ 12902460 (+) False tlcd5a
XM_043258194.1 mRNA downstream 1066 12898047 ~ 12902460 (+) False tlcd5a
XM_043258195.1 mRNA downstream 1999 12898980 ~ 12902460 (+) True tlcd5a
XM_043259170.1 mRNA downstream 6025 12903006 ~ 12942649 (+) True arhgef12a
XM_043259169.1 mRNA downstream 6033 12903014 ~ 12942649 (+) False arhgef12a
TU156910 other upstream 35639 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 35639 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 35639 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1062385 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1511090 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 1019592 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2019524 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 2024154 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2809532 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2809532 15706513 ~ 15710209 (+) False G106937

Expression Profile