RNA id: XM_043259782.1


Basic Information

Item Value
RNA id XM_043259782.1
length 2346
RNA type mRNA
GC content 0.48
exon number 5
gene id si:dkey-182i3.9
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13379653 ~ 13382951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAcgctacttttattttaaagacgtGGTTTTGTAGAAACGGAAGTTAACGCAGTAAACGCGGTATTGTTTGTGTTCTTACTTCATTCGCTCACTTTATAAATCAGATATTACAGTTACTGAATGAGCACAATGGAGGAGCATGAATTATTTCACAAACAGACTATGTCTATAATGATGCTTCTGATAGAAACAGTCCTAGACGAGATTCAGAAAGTTTTTGAATGTGAATGTCGCCCATCTCACACTGAAATTAGTGACAGAGATCCGATATTGGACATGCATGAGAAACAACGCAGACTGGCAAAGCTCACAGCTGTGATGGAGACCTTTACCAAGGTGGCTGTtcaaaaaatatgcaaagtCTTCAGTTATTGCTTTGCACTTAAGCCATCCCAGTTGAAGGGTTTTAAAAGTTACAACGATGATGtaataagttttaaaaaaatggtgaaGGAGCATGTGAAGAGACCAGAACGAAAAAACTGTCAAGTTGTCCGAGATGTGCCTGATTCTGCAGCTGTAGCTCCGTCAGTGTCTCTGGAGAGCCAGAGACTGCTCACTGCGTCGCCTCAAGAAAAAACTGTTCAACCACAAGATTCAGTTAAAGGCCAGGAGGAGGTTCAAGTTTCAGAATTTTCTCCCGAGCTGTCATTTTTTGTAGTTGAATACAGTACCATCGCTTCTGATGAAGACCAGCAAGGTGAAGTCGACGCACAAGCGGAGCAAATAAGTACAAAACCTGACAAAACCGGGAAGCCAAAACCGTATGACTGCAAAGAGTGCggaaagaaatatttctttagaCGCTCACTAGATCGGCACAAATGTGGACATTTAAAAGGGCCTCACTGTTGCGAGCAGTGCGGGAAGAAGTTCAAATACTTAAAAGGATTGAGGAAACACCTACTGAATCACACAGAGAAGAAAGGGATCTGCAAGACATGTGGGAAAGCCTTCGCGAATCTTAAGATGCACGAACGCGTCCACCTGGATGTGAAGCCCTTTCTGTGTTCCACGTGTGGACACAGCTTCACGGTGAAAGGAAGTTTGCTGGCACACCAGAGGATCCACACGGGTGAGAAACCGTACAGCTGCGAGGTCTGCGGGAAGCACTTCACGCACTCGAGCAACCTCGCCTGCCACCTGCTCACCCATTCCAACGACAGGCCGTGGAAATGCAGCCTCTGTGACAAGACCTTCAAAACCGAGAAGAAAATGAGCGCGCACCAGCTCGTGCACACAGGAGAGAAACCCCATGCGTGTAGCAAATGTGGGCAGAAGTTCGGCCACGTCACTAATCTCAGGAGGCATCTCCTGGTGCACAGCGGGGTGAAGCGGCACGCCTGTGAAATCTGTTCCAAGCAGTTTTATCAGAGCAAGTCTCTGAAGAGGCACATGGGAATCCACGGGGCTCTGAAGTCGTTTATGTGCGAAATATGCGGGAAGAGCTTTGTTTTTAACTATGCCCTACAGaaacacttactcacacacagcCATAAAGCAGATCTCAATGGCAAATCTAGAGATGGCAAGTCTTTCCCGTGCAACGAATGCGGAAAGCGCTACAGTTCGACCGCAATGCTCAAAATGCACCAGAGACTCCACACGGAGAAGGATCCGTACACGTGCAAAGTCTGTGGCAAGAGCTACAGCAGCTTGTATTCTCTGAAGGAACACCAGAAGCTTCATTCGGGGGCGACGCCGTTCAAGTGCGACATCTGCGACAAGACGTTCACCCAGAGAGTCGGTTTGAAAATGCACGAGGTGGTCCACACCAAAGACAGGCCGTACAGGTGTCCTGTTTGCGGGAGCCAGTTCGGCCTCCCCCACGGCCTGAGACTGCACATGCGCATTCACTCCGGCGAAAAGCCGCACAAGTGCGAGACGTGCGGGCTGTGCTTTCGCTTGTCCGGAAACCTGAGGAGGCACGAGCGCATCCACACCGGCGAGAGGCCGTTCAGCTGCGAGGTGTGTGGGAAGAAGTTCGTGCAGCTCAGCCACGTGAAGGCGCACATGCAGATCCACACCGGCGTCAAGCCCTATACGTGCCAGAAGTGCGGGAAGAAGTACGCGTACCGCAGAAACTACAACGACCACAAATGCATACCTGTGCGTGAAAACGACGTCGCCTTAAAGCGTGCTGGGGACTGAAGTGCAGTGCAGTGCACTTTCAGACAGATGTCATGAAGGTTAAAGACAGTGTTTACGTTTGGTTTGGAAAGCTGGATAAGCggtaataaaattaataattgagcCTGTCAAATTATTTAGATTCAAAATCAATAGTACAGTGGGAATCTTTCTGTACATTGCACTCTGTTCAAGAATAAACAGTTTGCCGAGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157016 lncRNA upstream 42976 13335308 ~ 13336677 (+) True G106276
XR_006252599.1 lncRNA upstream 423846 12945077 ~ 12955807 (+) True LOC122358384
TU156915 lncRNA upstream 530986 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 531239 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 599278 12773457 ~ 12780375 (+) True G106157
TU157129 lncRNA downstream 297229 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 309428 13692379 ~ 13692893 (+) True G106354
TU157164 lncRNA downstream 416350 13799301 ~ 13811099 (+) True G106370
TU157176 lncRNA downstream 499170 13882121 ~ 13884081 (+) True G106381
TU157180 lncRNA downstream 530628 13913579 ~ 13913790 (+) True G106385
XM_043259615.1 mRNA upstream 32654 13342997 ~ 13346999 (+) True phykpl
XM_043259334.1 mRNA upstream 88545 13287279 ~ 13291108 (+) True rnf26
XM_043259891.1 mRNA upstream 128436 13226503 ~ 13251217 (+) False cbl
XM_043259890.1 mRNA upstream 128436 13226505 ~ 13251217 (+) True cbl
XM_043259848.1 mRNA upstream 160434 12957097 ~ 13219219 (+) True grik4
XM_043259853.1 mRNA downstream 397 13383348 ~ 13389819 (+) True LOC122359520
XM_043259851.1 mRNA downstream 397 13383348 ~ 13389819 (+) False LOC122359520
XM_043258516.1 mRNA downstream 778 13383729 ~ 13385498 (+) True LOC122358638
XM_043259852.1 mRNA downstream 948 13383899 ~ 13389819 (+) False LOC122359520
XM_043258165.1 mRNA downstream 7582 13390533 ~ 13393817 (+) True si:dkey-182i3.10
TU156910 other upstream 532275 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 532275 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 532275 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1559021 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 2007726 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 533622 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 1533554 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 1538184 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2323562 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2323562 15706513 ~ 15710209 (+) False G106937

Expression Profile