RNA id: XM_043259799.1


Basic Information

Item Value
RNA id XM_043259799.1
length 963
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC122359481
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17414019 ~ 17414981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGTGGGAAACGTCAGCTTCATAAAGGATTTTGTAATAATTGGCTTTCCTGGACTTCAGCCTCATTACTATGGACTTGTATCAGCActtctattttttgtttatgtatttacattggttggaaatgctttattttttatgttgtttgtaaCTACCAAGAGCCTTCAGAAACCTGTTTACTATTTCATTATAAATCTAGTTGTATGTGATGTACTATTCAGCACCACAACATTACCGAAAATAATCAGCAGGTATTGGTTTCAAGATGGAACCATTTCATTCTTGGGTTGTTTTGTTCAGATgttctttgtgcattttttcgGCAGTGTCTGTTCCGTTATTCTGGCTGTAATTGCTATAGACCGCTATGCAGCAATTTGTTACCCGCTTCAATATCACAGCATCATGACAAACCAAAATGTACTCATTCTGTTCTTTGGCTCTTGGTTTTTGGGTTTGCTAGGCCCCGTAGCAATGGTCATTCGAGCTTACCCTCTCCCTTACTGTGCAGAAAATACAATTATGCACTGTTACTGTGATCACGTTTCCATCACAACACTGGCATGCACAGACAGATCACTATATAGTATTCCAGCTCTCATCTATGCCTTTGCAATTCTGTTGGTGCCCTTTGCTGTTATTATATTCTCTTACTGTTCTATCTTTGTAGCAGTTATGCGGATTTCAGGTACTCAAGGAAAGATGAAGACTTTCTCTACCTGCAGTCCTCAGCTTATCATAATTGTTCTCTTTTTCCTACCCAGgttgtttaattatttgtctGGCAACATTGGTATCAAGTTCAGCACTGATTTGCGCTTAGTAATCATTATGATGTATAGCTTGTTGCCGCCAATGATCAACCCCCTTATTTACTGTTTGAGAACAGAAGAGGTCAAAAAGTTACTCAGTAGACATCTTCCAAAGAAACAAGTTGGTATTCCTTTACGATCGATCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158701 lncRNA upstream 99358 17309345 ~ 17314661 (+) True G107447
TU158696 lncRNA upstream 213082 17200408 ~ 17200937 (+) True G107443
TU158686 lncRNA upstream 214406 17198455 ~ 17199613 (+) True G107440
TU158688 lncRNA upstream 214406 17198753 ~ 17199613 (+) False G107440
TU158683 lncRNA upstream 215689 17196154 ~ 17198330 (+) True G107438
TU158706 lncRNA downstream 39313 17454294 ~ 17457686 (+) True G107450
TU158729 lncRNA downstream 64867 17479848 ~ 17480048 (+) True G107468
TU158739 lncRNA downstream 151212 17566193 ~ 17566876 (+) True G107477
TU158831 lncRNA downstream 395352 17810333 ~ 17811203 (+) False trim3a
TU158832 lncRNA downstream 401151 17816132 ~ 17816825 (+) True G107547
XM_043259583.1 mRNA upstream 12272 17400734 ~ 17401747 (+) True LOC122359275
XM_043259582.1 mRNA upstream 18867 17394137 ~ 17395152 (+) True LOC122359274
XM_043259581.1 mRNA upstream 25979 17387024 ~ 17388040 (+) True LOC122359272
XM_043258532.1 mRNA upstream 39866 17373143 ~ 17374153 (+) True LOC122358673
XM_043258531.1 mRNA upstream 43911 17369098 ~ 17370108 (+) True LOC122358671
XM_043259575.1 mRNA downstream 9530 17424511 ~ 17425472 (+) True LOC122359267
XM_043259760.1 mRNA downstream 14200 17429181 ~ 17430131 (+) True LOC122359453
XM_043258533.1 mRNA downstream 17270 17432251 ~ 17433240 (+) True LOC122358674
XM_043258534.1 mRNA downstream 19671 17434652 ~ 17435599 (+) True LOC122358675
XM_043258396.1 mRNA downstream 45446 17460427 ~ 17463123 (+) True LOC122358547
TU158422 other upstream 899859 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1177678 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1370754 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1370754 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1530509 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 417091 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 444930 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 630036 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 630036 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 1341362 18756343 ~ 18758836 (+) True G107756