RNA id: XM_043259820.1


Basic Information

Item Value
RNA id XM_043259820.1
length 3463
RNA type mRNA
GC content 0.44
exon number 12
gene id masp1
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19607164 ~ 19617602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacggtccgTGGGGGAGAGGACTCATTGTAAACAGTTGCAATGTGACGTGTGGAGAAAAACTTGAGTTCAGACGGGAATGCAGCACCTTTCCAACTCACAGAGGAATTCATAAAGTCATGGAGCTTACACGAGTCATTGTGATCTTGGCCCAATGCGTATGGCCCTTGTGGACTCAAGTCATCCACCTAACGGACATGTATGGGACCATCAAGTCTCCAAACTTTCCTGAATCCTATCCGAAAGAGATAGATATACAGTGGAATATTACCGTAACAGATGGATATAAAATCAGAATCTATTTTATGCACTTCGACATAGAGCCGTCATACCTGTGTGAGTACGACTACTTGAAGGTGTACTCAGACTTGGAAGAGCTGGCTGTGTTTTGTGGAAAAGAAAGTACAGACACAGAACAGGTTCCTGCGGATAATGTCATCACGTCCCCTAGGAACTTGCTCAGTGTGGCGTTCCGTTCGGACTTCTCTAATGAGGAACGCTACTCTGGATTTGAGGCTCACTTTAGTGCCGTTGACGTGGATGAATGCAGAGACAGAAATGATGAAGATCTTGTCTGTGATCATTTCTGTCACAACTACATCGGTGGCTTCTACTGTTCTTGTCGCTATGGGTTCCTGCTTCATTCTGACAACAGAACTTGCAAAgTGGAGTGTAATGAAAGCGTGTACACGGAGCGCTCTGGGGAGATTACAAGTGCTGATTTTCCTAAACCGTACCCAAAAAGCTCTGACTGCACATACCGCATTGAGCTGGAAGAAGGTTTTCTAATCACTTTGGAGTTTGATGACACCTTTGACATTGAAGACCACCCTGAAGTCACCTGCCCCTACGACTTTATCAAAATTAATGCAGGAGACAAGGATTTTGGCCCATTTTGTGGTGAGCAGTCACCTGGGAAGATCCAGACAGGAAGTAACATAGTCAACATCCAGTTTCAGAGTGACAACACCGGCGAGAATCTTGGATGGAAACTCACTTACACCTCCACTGGTTCTGAATGCTCTCCTCTTGCGGCGCCCTTTAATGGACACCTGGAGCCTCTGCAGTCTAACTACATCTTCAAAGATCACGTTACGCTGACCTGTGACCCTGGATACTCACTGAGACTGGATGATAAAGAATTTGAGCACTATCAGATCGAGTGTCAGAGGGATGGGAAATGGAGCAGTGACGTCCCGCTGTGTAAAATGGTTGACTGTGGTCCAGTGGATGTAGTTCTGGGTGAggtgatttttaaaagttctgGAAACAGTACCGTGTTTGGATCCAGAATCCAGTACAGCTGCAGAGACTCTCTCCAGATCAACAACACTTACACCTGTAATCAGAGCGGGGAATGGGTGAGCGAGGACGGGACGCCCCTGCCCACTTGTCTGCCAGaaGATTTGGAAAGAACCCTGAGTACCAATTCTGAATCTCCACTTCCTAATCCATTAGCAAGTACTCCTCTCGCATGTGGTGAGCAGTCACAGCTCTTCCCAGCACAGCAGAAGCGAATCGTTGGTGGGAGAACAGCGTCTCCGGGTCTGTTCCCCTGGCAAGTTCTGCTCTCAGTAGAGGACGTGTCCCGTGTCCCTGAGGATCGCTGGTTTGGTAGCGGTGCTCTCCTCTCCTCCACTTGGGTTCTCACGGCCGCTCACGTTCTAAGATCTCACCGTCGTGATCTTTCGGTCGTCCCTGTCGCTTCTGAACACATCCGAGTCCACTTGGGCCTCACAGATGTAAGGGATAAGCACCTTGCCACCAACCGGTCTGTAACGAAAGTCATCCTCCATCCTCAGTTTGATCCTCAAAACTATAACAACGACATTGCTCTGGTCAAACTCAGCCAGGAGGTGGTGCTGTCTGCATTAATACGACCCGTGTGTCTACCAAGGCCTGGTGTAAAAGGTCAAGCCCTGATGCCTTTGCCCAACACACTGGGTATAGTGGCTGGTTGGGGCATTAACACAGCCAACGCTTCTGCTTCTACCAGTGGCTTGACCTCAGATTTAGGCACCGTCTCCGAGCTGCTCCAGTACGTGAAACTCCCAGTTGTGCCCCAGGATGAATGTGAAACTAGTTATGCATCACGCTCCGTCAACTACAACATCACCAGCAATATGTTCTGCGCTGGCTTCTACGAGGGCGGTCAGGACACCTGTTTGGGGGACAGTGGCGGAGCGTTTGTCACCCAGGATGCCCAGAGTGGGAGATGGGTGGCACAAGGACTGGTGTCCTGGGGCGGGCCAGAGGAGTGTGGCAGTCAAAGGGTGTATGGGGTGTACACTCGGGTGGCAAACTACATCCACTGGCTACACAGACACATGAATGTGGACCGCTGATGGTGAGGAAGTCGGAAAAGTGTAGTAGAGCTGGAAGTCTCTcctcatttttagtttttatcatCTTATTTTATCATTCTTATCATTTTCTACAAACTTAAAGGTGCTATATGTAGGATTGACACcgagtggttgaactaggtattgcagtccaaattcaaaatattgatgttttttttttcactaggCTCTTCCTCCTCAGACTTGACacacacgcaggttgccagattgacgaCACCAACGGGAACGAGCGCACATGGCAATGAATGAACGGTATTATTATGCCTTAGTAAAGTCAAAATTAAAGCAAGTCGAGAGTTACACACTGAAGTGTTCACAAAGTGTTTATTTGTAGTACAGATGGTATGAACTTGCGCTGGCCGCTTGAGTCAACTAGAAAGAACCATATATTCATCAAGTTTTTACTCATCTCAGTTTTGGCCCCATGCTTGAATCCTTCATCCTTTTTCAACATCTGCTGTTATTTAAAACTTATACTATACTCTTGTAAAATGATATTACCCTTCAGTACTGGTAAAGGTTTTTAGCTTATGAAGAcagcatacattttttacactaccgtttaaaagtttggggccAGTAAGtgttttaagatttattattttaaaataaattaacactttttcatcaaacaatcctgaaaaagatgaaaatagtAAGCAGCACAACCATTTTCAAGAGcgatcataataaaaaaaatatatttctttagcACCAAAATCAGcattatatttgaattatttttggaGGGTGGGTCATGTGACTGAAAATGTAGTTTCTCTATCAAATATCtaaaatacatatgaaaaaaaaaaatcaattgtactaatattttgcattattaacagtatttttGCACAATGCAGCCTTGGAACATATGAAAAACTTTTTGTAAGACATCACAATTTTTTACCTATCCTAAGTATTTTAATGTCATGatacaaaagcaaaatatataatatacatctTTATAAtgatacatataataaaaaattggtTACACTCCTTTTAAAAAGCTGCACTGATGTAGTTGCATTGTTATATCTGCACACGTTGAtgtaatatgaattaaataaatgttttaagaaacCTG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159627 lncRNA upstream 71317 19488226 ~ 19535847 (+) True G108055
TU159632 lncRNA upstream 89690 19514981 ~ 19517474 (+) False G108058
TU159633 lncRNA upstream 89690 19514981 ~ 19517474 (+) True G108058
TU159523 lncRNA upstream 379782 19222740 ~ 19227382 (+) True G108011
TU159501 lncRNA upstream 386112 19171887 ~ 19221052 (+) True G107996
TU159737 lncRNA downstream 71561 19689163 ~ 19689951 (+) True G108124
TU159770 lncRNA downstream 113137 19730739 ~ 19735234 (+) True G108154
TU159771 lncRNA downstream 113816 19731418 ~ 19735895 (+) True G108155
TU159835 lncRNA downstream 296547 19914149 ~ 19914443 (+) True G108207
TU159839 lncRNA downstream 381012 19998614 ~ 20055894 (+) True G108211
XM_043258322.1 mRNA upstream 10861 19595005 ~ 19596303 (+) True sst1.1
XM_043259433.1 mRNA upstream 25149 19580539 ~ 19582015 (+) True sst1.2
XM_043259002.1 mRNA upstream 28304 19550700 ~ 19578860 (+) True col4a3
XM_043258254.1 mRNA upstream 92682 19510346 ~ 19514482 (+) True rhbdd1
XM_043259863.1 mRNA upstream 137743 19434054 ~ 19469421 (+) True nyap2a
XM_043258352.1 mRNA downstream 27907 19645509 ~ 19649706 (+) True gmnc
XM_043258130.1 mRNA downstream 129990 19747592 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258127.1 mRNA downstream 134501 19752103 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258128.1 mRNA downstream 138969 19756571 ~ 19774376 (+) False si:dkey-262k9.2
XM_043258129.1 mRNA downstream 139015 19756617 ~ 19774376 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 181975 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 611204 18993345 ~ 18995960 (+) True LOC122358990
XR_006252667.1 other upstream 611204 18993345 ~ 18995960 (+) False LOC122358990
TU159167 other upstream 763309 18842276 ~ 18843855 (+) True G107777
TU159161 other upstream 811182 18794080 ~ 18795982 (+) True si:dkey-30e9.6
TU159761 other downstream 103682 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other downstream 125769 19743371 ~ 19774385 (+) False si:dkey-262k9.2
TU159893 other downstream 566518 20184120 ~ 20186861 (+) False G108245
TU159895 other downstream 566518 20184120 ~ 20249972 (+) False G108245
TU159862 other downstream 571431 20189033 ~ 20191454 (+) False G108230

Expression Profile