RNA id: XM_043259851.1


Basic Information

Item Value
RNA id XM_043259851.1
length 4947
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC122359520
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13383348 ~ 13389819 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATCTAtaataagttttatttagtttgtctgTCTAAAGGGaacaatttaatttgtatttaattaaacattattaatggtCAATGGTGCATATTcgcatacttttattttgaaatggatGTGAACTAAAGAGGAAGTGTTTGGCGCAGACTGCAACTTTTCCATGGAGTTTGCATACCTGGTGTATAATTGCAATATAATTACTTGGCTTCATTTCGAGGATTTGTTATTCACAGTCTATTAGCACTATTAAGATCATTTTATTGTATCTAatcaaacttttgtttttatattagacGCTGCACTGCCAATGCAGAACGTTTTTTAAATCTCGctgaaatattatgaaataatattcatatttgcacAGCTGTGGTCACTATGTCCAGGTATGAGTTTTTACAGAGTCAAACTGCTCTGATGATCTTATTAATGCCGGACACACAAAAGACATGCAGCTCTGCTGAGCCTCctgtcaacatgaaacaaaacGACATTCAGACTCCGGCTTCACAAGAGAGTCATGCAGACAGATGTCCTTTAGTGAAGGACAGAGCAGAAGACAACATTCAGACTGTAGTCATTGGTGATGCTGATGACACAGGTTACTCCGAAGACCAGGAAGGCGCGTTGCAGACGCCATCCAAGCGCCCTGAAAAGCCACAAGAGGACAGGTCTTTTGAATGTGAGCAGTGCGGAAAGGCCTTTCCAAAGAGGTTTTCACTTTTTCGTCACAAACGCGTGCATTCGATCATGAAGCAGCACAATTGCGAAAAATGCGGGAAGACGTTCTCGCAAGCAAGAGCTCTGGAGACTCATCTCCGCAAACATACGCAGAAGTTTGAGAAGAAGAAACTTCCCTGCGCTAcctgcgggaagagcttcaaaGATCTCGCCGCACACGAACGGGTCCACGCCGAGGTCAAGCCGTTTACCTGCGAAACCTGCGGACAAGGGTTCACGGTCAAAGGCAGCTTGTACATGCACCAGAGGGTGCACACGGGCGAGAAACCCTACACGTGTGACACCTGTGGCAAAAGTTTCTCTCTTATAGGCACGCTAAACTGCCACAAGAAGTTTCATTCGGATGACAGGCCGATAAAATGCAGCCACTGCAATAAGAGCTTCAAGTGCAAGAGTCATCTGAGACGCCACCTTCCAGTGCACACCGGCGAGAGACGATATACGTGTAAAGTCTGTGGTAAAGCATTTGCGCATCATGAAGCGATGACACGCCACATCCTCATTCACACCGGCGAGAAGCCGTACATCTGTGAAGTGTGCGGTAAAAGATTTCGCCAGAGAAGCAATTTAAAAGTCCATATGCGGGTGCACCAAGAGACACTACTTAAGTGCGAAATGTGTGGAAAAACATTCCAGCATGGTTTTTTGCTACAGGAGCACATTTCGTCACACAGTCTTACTGGAGATTCAGAACAAGACCCATTTTGGAGCTCCAAAACTCAGCTGCATTCAGACACCAGCAAACCTTTCACGTGCAAATTATGCGAGAAGAGCTACAGCAACATATATAATCTTCGCATACACGAGAAGCTTCACACAGGCGAGACCCCATTTAAGTGTGAAACCTGCGGTAAGGCCTTTAACTCTCAGAAAGTCCTTTAAAACGCACCTGCTGTGCCACTCGGGAGATAGACCTTATAAATGCATAGCGTGCGGGAAAGCGTTCAAGTGGTCTGGTTCACTGAAGATGCATATGAAGACTCATACCGATGAAAAGACTCACAAATGCGAGACGTGTGGAAAGAGGTTTCGCTTGTATGGAAATTTGAAGCGGCACAAGCGCGTCCACGCTGGGGAGAAGCCGTTCAGCTGTAAGGTCTGTGAGGAAGGGTTCACGGAAGTCGAGCGactcaaaacacacatgcaagtCCATACCGGATCCAAACCCTACATGTGCCAGAAGTGCGGGAAGAATTATGTGTATCTTAGACATTACAGCGGTCACAAATGCAAGCCTGTATCAGAACGATTCAGTCGTAGTGATTTGTAACCTTAACACTATCATGTGTAAAAAATTAACATGTTGGCATGGTTGGAAAACCTGGAAATATGAGGGTATTTATAATGCGTTAATTGTGTTTTCTGTACCCGAGAAAGTAACTGAAAACGGTACAATACAGAAACTTTAAAGTTAGCAAGTCTAAATGTTCCTAGTTGTGctctgatttaaatgattttatcagCTAGGTGCTGTCCTTGTGTTGAGCTGATGAGTCAATTTTTCAACTTGATTATTCAAACCTTCAGTAGTGAAATCTGacgtgaaatatgaaaaatatatatttttaaaagtgtttaaaaaaatccctATCCAGTCATCAGAAATGACAGAGAAACGTATAATTATAAGTATTCACGACtctataattaaatatgacGACGTCAGCTGGATTCTCTTTGGTAAACTCGTTGTTAAACCGTTATTCGTTTCCTGACTAATTGGACTGGAATATGCTTCCTTTAGAGCGttcaatgacttttattttgaaaatctgtaTCGAAAGTATATTTGTTCCAGTTGCTGAGGTCTGTGTCTTAGCGAAACCGTTTTAAGATCAAATTGATCCAAAACACTCTAGTGCCCGCAACAATTTAGCACTGAATTTTAAGTACctcaagttttgtttgtttattataagcaaccggatacttttattttgaaataaaacgaaGAGGAAGTACTTACTGTTGCGTGCAACTTTATTGggagtttttgtttatttccttCTCGTTCTGTTCGTACGGCCTGTCAAACACATATTTAGTTGATTTTGCTGCACGCCTTTGGTCACTATGGCCCGGTTTGAGCTTTTTCAGAGTCAAGCCACTCTGGTCGTGTCTTTACTGACGGACTCCGCTAAACACGAGATACTAGAGGCTTTCACATTCAGCTCCGGTGAACCCCGTCTCTCCATCAAACCAAACGATGCACAGATTCAGACGCTCAATTCCATAATGGAGAGGTTTGCCAAAGAAGTTGTGCAGAAGATTTGCAGTCTCTTCAGGTATTGTTCATCTGTGGCACCGGTTCCAGCTCAAATATGTTTGAAAGGTGGGGATGTCCTCAAGACTTCATCTCAGATGGGTCGTGATCTCAGTGGAGCAACACATATCCATATCCAAGAGTTTCAGGGAGACGCTGTAAGGCTCTCTGTGAGTCCCCTGAAGGATCCTGCAACGACGTCTCAAAAGAAACACTTCAACACGGAACCTGCACAGAAAAGTAATACAAGCATATGTCTTACGCTGGAAGAAGGAACAGAAGAAACCATTCAGAAAATATTCAGCAGTGACGCTGATGACAGGAGCTGGTCTGGAGATCAGGAAGGAGCCTCACAGACGTCAAGCAATCAAACTGAAGTCCCGCGATCAAAGCAGTCTTTTGAATGCGATCAGTGCGGGAAAGCCTTTCCGAAGATGTTTTCTCTCGTGCAGCACAAACGCGTGCATTCAATCGCCAGGCCTCACGCTTGTGAAAAGTGCGGAAAGAAATTCACGCTGCAGAGAGCGCTGGAGACCCACCTTCGCAAGCACTCGCAGAAGCCCGAGAAGCAGAAGTTTCCCTGCGCTAcctgcgggaagagcttcaggGACCTCGCGGCGCACGAGCTCGTCCACGCCGAGGTCAAACCGTTCGCCTGCGAAACCTGCGGACAGGGGTTCACGATCAAAAGGAGTTTATACATGCACCAGAGGGTGCACACGGGCGAGAAACCCTACAGATGCGACACCTGTGGCAAGTGCTTCTCCCTCATCGGCACGTTGAACTACCACAAAAGGATCCATTCAAACGACAGGCCGATAAAATGCAGCCACTGCAATAAGAGCTTCAAATATCACAAGCTTCTGAAACACCACCTGCGCGTGCACACGGGCGAGAGGCCGCACACGTGCGACGTCTGCGGGAAGAGCTTCGCGCTCTCCGGGACTCTAAAACGACACGTCCTCATTCACACCGGCGACAAGCCGTACGTGTGCGAGGTGTGCGGCAGGCGATTCAACCAGAGGAGCACCCTGAAAGGCCACATGCGAGTGCACGGGGAAAAGCGGTTCATGTGCGAAATGTGCGGGAAAACGTTCCAGTATAATTACGTCCTGAGGAACCACATCCTCACGCACGGCCAGGGCGGACACGCGGGCGATAAGAGCAACGCTCGGCGCTGCGACGTGTGCGGGAAGCTGCTGAGCTCCGCCTACGCGTTAAAAGCGCACTCGCAGCTGCACTCGGGCGACGGCAAGCCTCACGCGTGCGCGCTGTGCGACAGAAGGTACAGCAGCGCGCACTCCCTTCGGATGCACGCGCAGCTCCACACGGGAGAGAAACCCTTCAGGTGCGACGTCTGCGGCAAAGACTTCTCTCTGAGGGCTTCGTATAAAACCCACGTGTTTCTGCATTCGGGAGAAAGACCTCACGAGTGCGCGTCGTGCGGGAAGCTGTTCAAGCTGTCGAGCTCTTTGAAGATGCACGCGCGCACCCACACCGGCGAAAAACCGCACAAGTGCGAAACGTGTGGGAAGGCGTTTCATTTGTCGGCCAACCTGAAAAGGCACCGGCTCGTGCACACCGGGGAGAAGCCGTTTACCTGTGACATTTGTTTGAAGAGTTTCACGCAGCCCAACAACTTGAAGGCGCACATGCACGTTCACACGGGGAAAAAACCGTACACGTGCACCAAGTGCTGGAAAAGTTTTGCCTATCAGAGAAACTACAAAGATCACAAATGCGCTCCGCTTTGAGATGCTTTGAGATGTGTCGGACTGCTGAATTGGGGTCTGCCTACAGGCCCTTGGATTTCGTTGTAAAGCttgtaaatcattttgaaagttagactgaattaatttatttattaaaaaaaaaaaaaaatgtttccttgtATTTTTGCAAACTAAAAGCCATTGTATAAAATACGTCACATCTATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157016 lncRNA upstream 46671 13335308 ~ 13336677 (+) True G106276
XR_006252599.1 lncRNA upstream 427541 12945077 ~ 12955807 (+) True LOC122358384
TU156915 lncRNA upstream 534681 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 534934 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 602973 12773457 ~ 12780375 (+) True G106157
TU157129 lncRNA downstream 290361 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 302560 13692379 ~ 13692893 (+) True G106354
TU157164 lncRNA downstream 409482 13799301 ~ 13811099 (+) True G106370
TU157176 lncRNA downstream 492302 13882121 ~ 13884081 (+) True G106381
TU157180 lncRNA downstream 523760 13913579 ~ 13913790 (+) True G106385
XM_043259782.1 mRNA upstream 397 13379653 ~ 13382951 (+) True si:dkey-182i3.9
XM_043259615.1 mRNA upstream 36349 13342997 ~ 13346999 (+) True phykpl
XM_043259334.1 mRNA upstream 92240 13287279 ~ 13291108 (+) True rnf26
XM_043259891.1 mRNA upstream 132131 13226503 ~ 13251217 (+) False cbl
XM_043258165.1 mRNA downstream 714 13390533 ~ 13393817 (+) True si:dkey-182i3.10
XM_043258271.1 mRNA downstream 9990 13399809 ~ 13435825 (+) True mark4b
XM_043258274.1 mRNA downstream 9992 13399811 ~ 13434797 (+) False mark4b
XM_043258272.1 mRNA downstream 9996 13399815 ~ 13435825 (+) False mark4b
XM_043258273.1 mRNA downstream 10000 13399819 ~ 13435825 (+) False mark4b
TU156910 other upstream 535970 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 535970 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 535970 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1562716 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 2011421 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 526754 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 1526686 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 1531316 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2316694 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2316694 15706513 ~ 15710209 (+) False G106937

Expression Profile