RNA id: XM_043259874.1


Basic Information

Item Value
RNA id XM_043259874.1
length 1824
RNA type mRNA
GC content 0.48
exon number 7
gene id hepacama
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12852856 ~ 12858500 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCACATAGAGCTGTTGTTCGGGCTGGGGTCCTGAGAGCGGGGTTCAGTGCAGCCAGTGTCCCGTCTGGCAGGAAGCACTCTGCATTCTCAGCGACGTGCCTTGAGTGGACAAATCATGCTGATTGTGTGGGAGAGAAACCCAGCGCTGCTCGCAAGATGAAGGCAGAGAGGGAGGCATCATGCAAAGAGACAGCCGTTCCTTCAGCGTTTCTTCTCCTATGGCTTTTTATCTTTTCTCTGGCAGGTGTATGTGGGGTGAACATCAGCTGTCCGTCTCCTCTGGTGCGAGGCACACTAGGAGGCTCAGCTCTTCTCTCTGTGACCTACACCAGCACCAGCTCCGACCAGCCCGTTATTAAATGGCAGCTGAAGAGGGACAAACCTGTCACTGTGGTCCAGTCCATTGGGACGGACATCATCGGGAACCTGAGGCCCGAGTACCGCGGGCGAATCCTCCTGTACGAGAACGGCTCCCTGCTTTTGCATCACCTGCAGCTGTCAGACGAGGGCGCCTATGAGGTGGAGATCTCCATCACCGATGATACCTTCACTGGGGAGCGATACGTCAACCTTACTGTGGACGTTCCAGTGTCCAGGCCTTTTGTTCGCATGGTAGCTTCATCCGTCCTAGAGCTGACTGAGTTCTTCATACTCAACTGCACTCACGACAGTGGCACCAAACCTACCTATAGCTGGCAGAAGGGCGGGAAATCTTTGACCAATGACTCGCGTCTGCTCCTGTCACATGACCAGAAGGTCCTGACCATCTCCCGTGTTGTGATGTCAGATGACGACGTCTACAGCTGTAGGGTGGAGAACCCCATCAGCAGCATGAAGAGCATGCCTGTCAAACTCACCGTCTACAGACGGAGTTCTCTCTATATCATCCTCTCCACGGGAGGCATTTTCTTACTCATCACCTTGGTGACCGTGTGCGCCTGTTGGAAACCCTCCAAAAAAAAAAGGCAAGAGCTTGCCGGACAGAGCAGACAAAATGTAGCAGAGCAGAGCAACGGCAATCATGAAGTTGACATTGTGCCTGCTAGAAATTACCAGAACCGTCGGAACCCCGGTGGACTATATGTCCTCAAAGAAACAGATTTCCCTGATGGAACAGACGAGTCTTCCTGTAACTATATCAATCCGATTGATCCCCTCAGCCCACCTTGTTATCCCAGCATGGCTTCACCTTCTGCACACTCTCCAGATGCTTATATGCAGTCAGGAAGAAGATACCCCCGTACCCCCGTCCCCTCTCCTCCATCAACCCCTCATCCGACTCTCAGTCCACCGCACATGGGCAGCTTAACACGCAAGCCCCACCCTCAGAGACTAAGCCCCTCCCCTCCACGCGCAGAAGACTTTCCGATTGAACCAGAAAACAATATGCACCACCACAGCCTCCCACGATGAGCGAGACAATAGAGAGCTTTGAATGTAAAATGCCAAGGATAATGTCAGATTACGTGGGTAGGGTCATTTTAATTAGTCATTTGTATTAGTTATCTTATGcaaattttagtattttatgctTTTCAAAAGCTATAGGTGAATGATTGGCGTAAAGGACCAAAACTTGTAGTTGTAAAGTAAGAAACTAATTTATCAGAGAAGTACAagtgcattatttgtttttgtatactaatagaaacatttgatttttatcAGACTGAGCTGTGGTTTACGCCCTGAACTAAaccaatataatattttaaaaagaacaaaaatctgTTTCATTTAATCTATATTGAGGATTATTGTGATCTCTTAGGATTTACTGTGAATATTACTTTATGTcagtattaaaattatttcattctt

Function

GO: NA

KEGG:

id description
K23116 HEPACAM; hepatocyte cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156915 lncRNA upstream 4189 12842177 ~ 12848667 (+) False spa17
TU156914 lncRNA upstream 4442 12842177 ~ 12848414 (+) False spa17
TU156833 lncRNA upstream 72481 12773457 ~ 12780375 (+) True G106157
TU156859 lncRNA upstream 80786 12771795 ~ 12772070 (+) True G106171
TU156842 lncRNA upstream 111779 12738051 ~ 12741077 (+) True G106161
XR_006252599.1 lncRNA downstream 86577 12945077 ~ 12955807 (+) True LOC122358384
TU156962 lncRNA downstream 399736 13258236 ~ 13798248 (+) True G106234
TU157016 lncRNA downstream 476808 13335308 ~ 13336677 (+) True G106276
TU157129 lncRNA downstream 821680 13680180 ~ 13685449 (+) True G106350
TU157134 lncRNA downstream 833879 13692379 ~ 13692893 (+) True G106354
XM_043259875.1 mRNA upstream 5470 12837582 ~ 12847386 (+) True spa17
XM_043259795.1 mRNA upstream 119428 12727956 ~ 12733428 (+) True ankk1
XM_043259796.1 mRNA upstream 119428 12727956 ~ 12733428 (+) False ankk1
XM_043259792.1 mRNA upstream 126583 12718060 ~ 12726273 (+) True LOC122359478
XM_043258325.1 mRNA downstream 3278 12861778 ~ 12868653 (+) True pde9ac
XM_043258326.1 mRNA downstream 3278 12861778 ~ 12868653 (+) False pde9ac
XM_043259754.1 mRNA downstream 24517 12883017 ~ 12896981 (+) True oafa
XM_043258193.1 mRNA downstream 39547 12898047 ~ 12902460 (+) False tlcd5a
XM_043258194.1 mRNA downstream 39547 12898047 ~ 12902460 (+) False tlcd5a
TU156910 other upstream 5478 12842177 ~ 12847378 (+) False spa17
TU156912 other upstream 5478 12842177 ~ 12847378 (+) False spa17
TU156913 other upstream 5478 12842177 ~ 12847378 (+) False spa17
unassigned_transcript_2151 other upstream 1032224 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156035 other upstream 1480929 11370636 ~ 11371927 (+) False LOC122358628
TU157171 other downstream 1058073 13916573 ~ 13917262 (+) True G106376
TU157784 other downstream 2058005 14916505 ~ 14916883 (+) False tbx4
TU157786 other downstream 2062635 14921135 ~ 14925515 (+) False tbx4
TU157969 other downstream 2848013 15706513 ~ 15712439 (+) True G106937
TU157970 other downstream 2848013 15706513 ~ 15710209 (+) False G106937

Expression Profile