RNA id: XM_043259882.1


Basic Information

Item Value
RNA id XM_043259882.1
length 4074
RNA type mRNA
GC content 0.43
exon number 14
gene id clip3
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 15826161 ~ 15837908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGACGCGGAGAGGAGAGTGGTCCAGCAGCCGTGAGTCACGAGCGTGACGCGCGCAGAGAGAAGGACAAGGCGCAGCATCCTCTCCATCCTCCATAGCACAACAACGGCTGACAAAAGAGTGGAAGAGAAATCGCGGTTTTGAGGCTTGTTTTCAGGCCCAATCACATCAGCAGAATGACTAAAGAGGAAACCTCTGAGGTGGAAGAGGCCCAACCGGCCTCTGAGTTCATCAGCCCGGTTCATGAACCCCGCAAGAAGCCCATAGTGCATCCATCTGCACAGGCTCCACTGCCCAAAGACTATGCGTTTACCTTCTTTGATCCAAATGATCCTGCCTGCATGGAGATTCTGACAGACCCTCGGACCACAATCCCAGAACTGTTCGCCATTATCCGCCAGTGGGTTCCACAAGTTCAGCACAAGATCGACATCATAGGCAATGAGGTATTAAAGAGAGGTTGCCATGTGAACGACCGTGATGGCCTGACAGATATGACACTTCTCCACTACTGCTGCAAAGCAGGAGCTCACGGAGTGGGTGATCCCGAGGCAGCGCTCCGACTTTCCAATCAGCTGATAGCTCTGGGAGCTGATGTGAGCCTGCGCAGTCGTTGGACCAACATGAACGCCCTTCATTATGCGGCTTACTTCGATGTGCCAGAACTGATTCGCGTTCTGCTCAAAGCCTCCAAGCCTAAAGTGCTCAACTCCACCTGCAGTGACTTCTACCACGGCACAGCCCTGCACATCGCAGCCTCCAACCTCTGTCTCGGTGCTGTCAAGTGTCTGCTGGAGCATGGAGCCAACCCCACTGTCAGGAATGATAAGGGTCAGGACCCTGCTGAGGTTGTTCCTGACCCCATGGACATGAGTCTGGATAAGGCTGAGGCTGCTATGGTGGCTAAAGAGCTGAAACAGCTGCTGCTGGATGCAGTGCCTCTCAGCTGTAACCTGCCCCGTGCCACCCTGCCCAACTACGACAACATTCCCGGCAACCTCATGCTCTCCTCTCTGGGCCTCAAACTAGGGGACCGTGTGGTGCTGGATGACACGAAGACTGGCACCCTCCGTTTTTGCGGCACCACTGAGTTTGCTAGTGGGCAGTGGGTTGGTGTTGAGCTGGACGAGCCGGAGGGCAAGAACGACGGGAGTGTGGGTGGGATTCGCTATTTTATCTGCCCCCCAAAACAAGGCATCTTCGCCCCTGTGTCAAAAATTAGCAAAGCCCTTGAGCAGACCCCCTCTTCAGTCACCTCCACCCCAAAAACCCCTCGCATGGATTTGTCCCGTGTAACCGGCaagattaaaaaagagaaaaaagagaaagaccgTGAAAAAGCTCCAAGAAAGAAGTCTCTGTCCGGCGTCAGTTTGGATCCCGATGGAGTCAAGGTTGAGGTTGGGGATCAGGTGTTGGTGGCAGGCCAAAAGCAAGGGATTGTCCGCTTTTTTGGCAAGACAGACTTTGCTCCCGGATATTGGTTTGGTGTGGAGTTGGAGCAACCCACTGGAAAGCATGATGGCAGTGTGTTTGGAGTGCGTTACTTCCACTGTCTGCCCAAATATGGGGTTTTTGCACCACCATCCAGAGTTCAGAGAATTGCAGGGCCCAAAGATCCTCAGGGTGATGGGACACTAGTGAAGAAAGTCCACCAGGTGACTATGTCCCAGCCGAAGCGTAATTTTAATGCCATGCGTTCTCCAAAAGACATAACATCTGAAAGCTCCATATCCAGCAGGTTGCTGTTCTGTTGCTGGTTTCCCTGGATGCTCCGTGCAGAGATGCAGTCCTAAATCCACTGGTTACATCTTTAATTCTATCTACCCCTTTTTGTGTTCCTCCTCAAGATAAAATCCCGCCCACTCTGTGCACTTCCATTACTCATGTGTGCTTCTCTCTGTGAACTACCCAGACTGCTGTCCCGCCCCTTTGACGGCAACtcaatagcaaaaaaatagTGCCTTGTCAAGTAACTAACGTCCTGCATTCCGACGATTGAATTATAGACGAACAATCttttatgaaatcaaaataagGGAAAATCGTTTCTACTAAAAGCCATTCATATCTCTCTATCtgctttggggtttttttgctaAACCACTGTGGGTAGATTATCGGCAGTATTCGAGCTTGATAATACAGTCATAATCCACAAACAACTACGCTTGTATgtctattttaatttgtaaaggtgcttttttgttttgtttgtaaacatGCTGCTGTATTATGTACTTTTGCTGTCTTACTTTACAGTATTTTGTAGTATACAGACTTTGTTTCTTAAGTTTCAGATGCCTTTAAGTGAACTAGTAGGTGACATATTAAtagtaaacataaaatgtttcattgtaACTGTAGTCTGAAAATATTGATGCTGCCAATGTGAAGAAGAAGAGGGTTTTTATCATTGGAGCCCAATACTTTTTTTATCTACAGTGAAACCGTAAGCGTAtagcttaaaatatattaatatgttgcATGAAATAAGCAGGCATGGGCACGTTTTTAGGTCACAAACGTCTCTGAAATGAGGTGAGAGGCCTGCCTTAGATGTTATAAGCTAATAAATcgcaattaatttaattcaaatcaaCCAAAGCGCAAGCTCCACGATATAGCAAAAGCTAAATAATCTCTTTCTTCAAAACAGTTTACCACTTCGGTAATGCAACTCTTAAGAGGAGGCATGTTCATTTTTGACCTTTCATAAAAACGAGGTGacaataagcatttattttataaacccAAATAACCATACAAATCACAATCATGTTTCTCTCaccaaaagaagaaataaataaataaataaaactaattatagtTCATCTAGTATAGTTTGAAGTGAAgtacagtttatattttaacataaatccTCATCTATTGTCTACAGTGTAATATATAAAAGCTGTTAGGCCAGACTACCTATTCCTTTACTCTCGGTTTTCACTCGGATCAGTTtcgtaaatgctgttctttaaaatcCTGATTGTGAAAACAGTATGTGCTTATGATGTTGTAATCAAGTGTGTGGGTAATAACAGCAATATTTACTCTGTGTCAACATGCTATATGAATATGGATAGAAGCTCTCTACTTTATTACCACCTATGGAAGCACAGCATGAGTAAAAAGTGTCTGTCCCTAATAGATGACCTGGGATCAGTTAACAACGAGATCTTCTGCGGCGATCCCAGAGCGGACAGATTTTGTTTAggagagaataaaaaacaacagcttgGCTTGTGCGCTCTCCTTTCTCGTGAACACTTGGTCAAAAACGCAccgatttacaaaaaaaacaaaaaaaaagagcaactcgcaaaactgaaaatgtactgcTTGAGCAGGTCTGAACAGCTTTTGAGTTCTTACGACGCCATGCCatcatttcctttaaaaacaacccaatcTGTGTGGTAGTGACACTGTAGTGAGTAGAATAGTGCATCTTCCGATGGAGTGCAAAGGTCAGCTCACAACAAACCTGAAATTGTGCATTATCATTTTGTGACGTATAGAGTACAGTATATTGTTTTATGGTGACTTGAAGTTGTAGAAAGCATCGTTTACCTTAATTTCACCACAAGTCACGTTCCGTTTTTCGATGCCAAAAGGAGAGTAAAAGTATGACTGTAAATTGACTTTCATAATGTAAGTATCTCGCACTGACCGGTTCACCCTCCATGCTTTCATAGTTTCAGTGTGACATCTAGCATTTGTCAGCAAAGCTTTCTGACATTTTCTATCCAGCTGTGTAATTGGTATAGttcatttgtaaacatttattcgtctgagaaaatatatattttaataatttcacaaGGTACTTTTTTAACGTCCTGTGCTTTGTGTTTTCATGTTAACTATGTCTGTAAATCAGATTAACGTAGATCTCATCATTAATTCGGTTTTGGATTCGATGGACAACATAACTGTACTGCATGCTGTGTATACATTTGCAGGTTTCTTTTTCCTACGGTATATCAGCATGAAAAAGCTTATTAATTCAAGTGAAACTGTAGCTATGGTAAATACATGACTAATAAACGTTAGTGTTTTATACTTA

Function

GO: NA

KEGG:

id description
K10423 CLIP3_4; CAP-Gly domain-containing linker protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157978 lncRNA upstream 188132 15637174 ~ 15638029 (+) True G106941
TU157948 lncRNA upstream 254999 15502558 ~ 15571162 (+) True G106924
TU157952 lncRNA upstream 315051 15510317 ~ 15511110 (+) True G106926
TU157909 lncRNA upstream 343489 15397722 ~ 15482672 (+) True G106898
TU157869 lncRNA upstream 534998 15290829 ~ 15291163 (+) True G106873
TU158213 lncRNA downstream 56225 15894133 ~ 15894624 (+) True G107113
TU158264 lncRNA downstream 162307 16000215 ~ 16002131 (+) True G107136
TU158271 lncRNA downstream 231576 16069484 ~ 16069741 (+) True G107141
TU158283 lncRNA downstream 251849 16089757 ~ 16115455 (+) False G107148
TU158276 lncRNA downstream 301905 16139813 ~ 16167005 (+) False G107145
XM_043259887.1 mRNA upstream 7015 15800729 ~ 15819146 (+) False gipr
XM_043259888.1 mRNA upstream 7015 15800730 ~ 15819146 (+) False gipr
XM_043259884.1 mRNA upstream 7015 15800733 ~ 15819146 (+) True gipr
XM_043259886.1 mRNA upstream 7015 15800740 ~ 15819146 (+) False gipr
XM_043258305.1 mRNA upstream 164506 15658988 ~ 15661655 (+) True LOC122358489
XM_043258212.1 mRNA downstream 7666 15845574 ~ 15865410 (+) True si:ch211-137a8.2
XM_043258620.1 mRNA downstream 34173 15872081 ~ 15877855 (+) True si:ch211-137a8.4
XM_043258631.1 mRNA downstream 51446 15889354 ~ 15893250 (+) True capns1b
XM_043258633.1 mRNA downstream 55489 15893397 ~ 15900634 (+) False zgc:101731
XM_043258634.1 mRNA downstream 55489 15893397 ~ 15900633 (+) False zgc:101731
TU157969 other upstream 113722 15706513 ~ 15712439 (+) True G106937
TU157970 other upstream 115952 15706513 ~ 15710209 (+) False G106937
TU157786 other upstream 900646 14921135 ~ 14925515 (+) False tbx4
TU157784 other upstream 909278 14916505 ~ 14916883 (+) False tbx4
TU157171 other upstream 1908899 13916573 ~ 13917262 (+) True G106376
TU158204 other downstream 43206 15881114 ~ 15883510 (+) True G107107
XR_006252631.1 other downstream 166962 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other downstream 166962 16004870 ~ 16043265 (+) False gdpd5b
TU158282 other downstream 251849 16089757 ~ 16236341 (+) True G107148
TU158422 other downstream 675412 16513320 ~ 16514160 (+) False lyrm9

Expression Profile