RNA id: XM_043259902.1


Basic Information

Item Value
RNA id XM_043259902.1
length 1437
RNA type mRNA
GC content 0.46
exon number 5
gene id zgc:174895
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9566304 ~ 9568508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGACTGACTTCAAGTCTTTGGGCTGAAAAAGACTATTATTTGTAAAGCATCAGGACGAATCGCAGCCTGATTTAAACCTACACACAACCCATTATCGGCGGTTCTCGCTCTTTCTGAATCTCTCATATTCGCACTTGGCTCCTGTGCCTAAACACTACTGAGCGCCTCGGCTGATGTCGCGGAGGGATATATTGCTCTCCGCTTCTGGACACGCCGCCGTACTGCGGATAGATATCATGAGCGCAATCAGCCTCGGTTAGTCCCAGGAGTCAGTCGCGCTGTAGCGCAACGCGACGTTAttgagcatttatttaaaagatatatCACGGGTcctttctttcacttttttttatttacttaaccTGAGAACCATCTCTCAGAATTTAGCAGCTGCCAAAGTAGACAGTTAACCCCTCGTCTTTGGCTCAAGCCTGGAACTACTCCAGTTCATAGAAATATAACGGAGTGGGCTACAAGTGCGTTATCAAACATTAACGTTTACAGTTTGTTAGGGGGGTGGGGGCGCCAAAcatgcttgtttttaaaagcagcgACCCAGTAAGTGCTCTGGTTTGTGGCTCACGCCCACTTTACCCAGTACTCCAACTCGACACCAAATCGGCCACACGCCGCTACCGAAGTGAGCTTTCAGACGTCCGGCGGTCTTCCCAGAATGGATGTTTTAACAGTTCCCCAAAAGAGAGAAGAGGGCTGGTACTTGTCTCTAATGGCACCAAACACAAAGGGTCCAAAATTTGCATGGCTCGATCCATCAAGGGTTTATTGCAATTCACAGGCCCTGTCAGATTGCGTAAAAGATCTTCTCAAACCGTTCCAGAACGAGACCGTTGACCTGGTGGCTGGAATAGATGCCATGGGCTTCATCCTCGGTTCAGCTGTGGCCGTGACTTTAGGAAAAGGGTTTCTGGCCATCCGAAAAGCGGGACACTTATGTGTTGAAACTCGCGCTCAGGACTACAGCGACTACTCCGGACGAGAGAAACTGATGGAAGTGCGAGTCGATGTGTTAAAGCCAGGTCTGCGGGTTCTTATAGTAGACCAGTGGATCGAGACTGGAGGTACTATGAGAGCAGCTATTAAACTGGTGGAGAATCAAGGAGCTGCTGTTGTAGGCATTGCCGCCGTGGCCATTGAGAACAGCGAGGGGGGAAAGTGGCTAAaggaaaactataaatattcCCACTGCATCCCAAAAGAGCTGCAGTCTCAGATAGACGCTCAGCACCTGGAGTCTTTTAAGAGCTTTAGTGGTTAAGTTAAATTGAGAAATCGCTAAATAATATTCACGGGaacttttaaattgcaattttaaggTTGTAGCTTAGATTACAAACTTGAAAATGGTGAAATAATCAATAATGATGAACTTGAACGGTATTAAAATCAGTATTTAATCAAATGACATTATATATTGA

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155049 lncRNA upstream 23102 9542366 ~ 9543202 (+) True G105002
TU155043 lncRNA upstream 45194 9520719 ~ 9521110 (+) False camkk1b
TU155005 lncRNA upstream 173735 9392141 ~ 9392569 (+) True G104974
TU155004 lncRNA upstream 174451 9391457 ~ 9391853 (+) True G104973
TU154960 lncRNA upstream 285835 9273559 ~ 9280469 (+) False LOC122358919
TU155068 lncRNA downstream 101126 9669634 ~ 9673345 (+) False G105011
TU155226 lncRNA downstream 129566 9698074 ~ 9698409 (+) True G105101
TU155228 lncRNA downstream 134918 9703426 ~ 9703649 (+) False dusp14
TU155231 lncRNA downstream 137700 9706208 ~ 9706530 (+) True G105106
TU155240 lncRNA downstream 165695 9734203 ~ 9738624 (+) True G105112
XM_043259168.1 mRNA upstream 8114 9555556 ~ 9558190 (+) True LOC122359051
XM_043259166.1 mRNA upstream 10897 9549682 ~ 9555407 (+) False LOC122359050
XM_043259167.1 mRNA upstream 10897 9552678 ~ 9555407 (+) True LOC122359050
XM_043259165.1 mRNA upstream 14252 9549752 ~ 9552052 (+) False dhrs11b.1
XM_043259163.1 mRNA upstream 17243 9545957 ~ 9549061 (+) True ca4b
XM_043259941.1 mRNA downstream 9057 9577565 ~ 9587102 (+) False nek8
XM_043259937.1 mRNA downstream 9057 9577565 ~ 9587102 (+) False nek8
XM_043259944.1 mRNA downstream 9143 9577651 ~ 9586512 (+) False nek8
XM_043259943.1 mRNA downstream 9149 9577657 ~ 9586850 (+) False nek8
XM_043259940.1 mRNA downstream 9475 9577983 ~ 9587102 (+) True nek8
XR_006252679.1 other upstream 14176 9549752 ~ 9552128 (+) True dhrs11b.1
TU155045 other upstream 42696 9521667 ~ 9523608 (+) False camkk1b
TU154361 other upstream 809197 8756327 ~ 8757107 (+) False LOC122358603
TU154357 other upstream 817728 8747855 ~ 8748576 (+) False LOC122358602
TU154346 other upstream 932882 8632341 ~ 8633422 (+) False LOC122358505
unassigned_transcript_2148 other downstream 6001 9574509 ~ 9574582 (+) True trnat-agu_66
unassigned_transcript_2149 other downstream 6347 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252680.1 other downstream 20281 9588789 ~ 9623972 (+) False traf4a
TU155072 other downstream 101126 9669634 ~ 9673345 (+) True G105011
TU155356 other downstream 525147 10093655 ~ 10110441 (+) False ypel2b

Expression Profile