RNA id: XM_043259926.1


Basic Information

Item Value
RNA id XM_043259926.1
length 6548
RNA type mRNA
GC content 0.49
exon number 32
gene id cltcb
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10300340 ~ 10325420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTGAATGATGTGGCAAAAATGAAACGAATTATTTAATACTGACTAGACTACTCATACCGGCACTTAtaaatcaaatctaaaatattaaccACCCGAGCGCCCCCACAGACCATATCAGAGCTTCGCGCGTCGCCCGCTTTATTAACAAAATCGCTGAAATCGCGAATGTCCTTCCGCCGCAAAGTCCGCGCTGCTGCTTCCGGATTGTCAGTCTGAGCTGTTTCCGCCGCCATTGCGGGTCTGAGCGAGTCCCATCCGTGCAgagaggggagaaaaaaaacatcagccATCTGGCGGATTGGCTTGACACGACGAAAACGCGACACTCGCATTCTCTGTCTAATAAAGCCGACAGTCCCgcatttgttctgttttgaatCGGGGGGTGTCCGCGGAGAGGAGGTCGTCGCTCGCTAAAGCTAGGCAGAAATTTTGCGAGGAGTCCGGCCGGGAGGATTGAGATAAGAAAGCCCAAACCATGGCTCAAATCCTGCCTATCCGCTTCCAGGAGCACCTGCAGCTCCAGAACCTGGGCATAAACCCAGCGAACATTGGGTTTAGCACCCTCACGATGGAGTCGGATAAGTTCATCTGCATCCGGGAGAAGGTGGGCGAACAGGCCCAGGTGGTGATCATCGACATGAGCGATCCAAACACGCCCATCCGCAGGCCCATCTCCGCAGACAGTGCCATCATGAACCCAGCCAGCAAAGTCATTGCTCTTAAAGCGGCAAAAACCCTTCagattttcaacattgaaatGAAGAGCAAGATGAAGGCCCACACCATGACCGAGGACGTTACATTTTGGAAGTGGATCTCTCTCAATACCGTAGCACTCGTGACAGACAATGCGGTCTATCACTGGAGTATGGAAGGAGACTCACAGCCCATCAAAGTCTTTGACCGGCATTCCAGTTTAGCaggctgtcaaattattaactACCGCACTGACGCCAAACAGAAATGGCTGCTTCTAATTGGAATTTCCGCACAGCAAAACCGCGTCGTGGGCGCAATGCAACTTTACTCGGTGGACAGAAAGGTGTCGCAGCCGATCGAAGGCCATGCTGCTGGGTTTGCTCAGTTTAAAATGGAGGGAAACGCTGAGGAATCCACACTTTTCTGCTTTGCTGTTCGGGGACAGGCTGGAGGAAAGTTGCACATTATTGAGGTTGGAACACCTCCGTCAGGTAATCAACCCTTTCCAAAGAAAGCAGTCGACGTGTTTTTCCCTCCAGAGGCCCAGAACGATTTTCCGGTCGCAATGCAGATAAGCTCCAAGCATGATGTTGTCTTTCTCATCACCAAATACGGCTACATCCACTTGTATGACCTTGAGATGGGCACCTGCATCTACATGAACCGGATCAGTGGAGAGACCATTTTTGTCACCGCTCCTCATGAAGCCACTTCTGGCATTATTGGTGTGAACCGGAAGGGACAGGTGCTGTCTGTGTGCGTGGAGGAAGAAAACATCATCCCTTACATAACTAACGTGCTGCAGAACCCTGATCTGGCTCTCAGGATGGCCGTTCGCAACAACTTGGCAGGTGCCGAGGAGCTCTTCGCCCGCAAATTCAACAACCTATTTGCTGGTGGCAACTACTCTGAAGCTGCCAAAGTGGCTGCCAATGCACCAAAGGGCATCCTGCGCACTCCAGACACCATCCGTCGTTTCCAGAGTGTTCCTGCTCAGCCTGGTCAGACGTCTCCCCTGCTGCAGTACTTTGGGATTCTGCTGGATCAGGGCCAGCTGAACAAGTTTGAGTCATTGGAGCTTTGCAGGCCTGTCCTGCAGCAAGGCCGCAAACAGCTCCTGGAGAAATGGCTGAAGGAAGACAAGCTGGAGTGCTCTGAAGAGTTGGGTGATCTGGTGAAGTCTGTGGATCCGACTCTTGCGCTTAGTGTTTATCTAAGGGCCAATGTTCCCAACAAAGTAATCCAGTGTTTCGCGGAGACCGGTCAGTTCCAGAAAATTGTACTGTATGCAAAAAAGGTTGGCTACACTCCAGACTGGATCTTCCTGTTGAGGAACGTCATGCGGATCAGTCCAGAACAAGGCCTGCAGTTCTCCCAAATGCTCGTTCAGGACGAGGAACCACTGGCAGACATCACTCAGATTGTGGATGTGTTTATGGAGTATAACCTGATCCAGCAGTGCACTTCTTTCCTGTTGGATGCCCTGAAGAACAACCGCCCCACAGAAGGTCCTCTGCAGACTCGTCTGTTGGAGATGAACTTAATGCACGCCCCACAGGTGGCAGATGCCATCCTGGGAAACCAGATGTTCACTCACTACGACCGGGCTCATGTGGCTCAGCTGTGTGAGAAGGCAGGTCTTCTACAGAGAGCTCTGGAGCACTACACTGACCTGTATGACATCAAACGGGCCGTGGTCCACACCCACCTGCTCAACCCAGAGTGGCTGGTGAACTTCTTCGGCTCTCTGTCGGTGGAGGACTCTCTGGAGTGTCTGAGAGCCATGCTTTCTGCTAACATTAGACAGAACCTCCAGATCTGCGTACAGGTGGCCTCCAAGTATCACGAGCAGCTCTCCACCCAGTCACTCACAGAGCTCTTTGAGTCCTTCAAGAGCTTTGAGGGTCTGTTCTATTTCCTGGGCTCCATTGTGAACTTCAGCCAGGATCCAGAGGTTCACTTCAAATACATCCAGGCTGCTTGTAAAACTGGTCAAATCAAAGAAGTGGAGAGAATCTGCAGAGAGAGCAACTGTTACGATCCTGAGCGTGTGAAGAATTTCCTCAAGGAAGCAAAACTGACCGACCAGCTGCCCCTCATCATTGTGTGTGACCGCTTTGACTTTGTCCATGACCTTGTGCTCTACTTGTACCGCAACAACCTGCAGAAGTACATCGAGATCTATGTTCAGAAGGTGAACCCCAGCCGTTTACCTGTGGTGATTGGAGGGTTGCTGGACGTGGATTGCTCTGAGGACGTCATTAAGAACCTCATTCTGGTGGTCAGAGGCCAGTTCTCCACTGATGAGCTTGTGGCCGAGGTGGAGAAGAGAAACAGACTGAAGCTGCTTCTGCCGTGGTTGGAGGCCCGTATCCACGAGGGCTGTGAGGAACCTGCTACCCATAATGCACTGGCTAAAATCTACATCGACAGCAACAACAACCCTGAGCGTTTTCTCAGAGAGAACCCCTACTATGACAGTCGCGTGGTGGGCAAATACTGCGAGAAGAGAGACCCCCATCTGGCCTGTGTGGCTTACGAGAGAGGACAGTGTGACCAAGAGCTCATCCATGTTTGCAATGAGAACTCGCTCTTCAAGAGTTTGTCCCGATACCTTGTGCGTCGTAAGGACCCCGAGCTGTGGGCTAGTGTGCTTCTGGAGAGCAACCCTTACAGGAGACCCCTAATCGACCAGGTTGTTCAGACTGCCCTTTCTGAGACTCAGGACCCTGAGGAAGTGTCTGTTACTGTCAAAGCTTTCATGACTGCTGACCTACCCAATGAACTCATTGAACTTTTGGAGAAGATTGTTCTGGACAACTCCGTTTTCAGCGAACACAGGAACCTGCAGAACCTCCTGATCCTGACGGCCATCAAAGCTGACCGCACTCGTGTCATGGAGTACATCAACCGCCTCGACAACTACGACGCTCCAGACATCGCTAACATCGCCATTAGCAATGAGCTCTTCGAGGAAGCTTTTGCGATCTTCAGGAAGTTCGATGTAAACACATCAGCAGTGCAGGTTCTTATTGAGCACATTGGGAATCTGGACCGAGCCTATGAGTTTGCTGAGCGCTGTAATGAGCCGGCCGTGTGGAGTCAGCTGGCTAAAGCACAGCTGCAGAAGGGACTGGTGAAAGAGGCCATTGACTCTTACATCAAAGCTGACGACCCCTCGGCCTACATGGAAGTGGGACAGGCTGCAGCCCAAAGTGGAAACTGGGAGGATCTGGTCAAGTTTCTGCAGATGGCTCGTAAGAAGGCCCGTGAATCGTATGTAGAGACGGAGCTGATCTTTGCACTGGCCAAGACCAACCGTCTGGCTGAACTGGAGGAGTTTATCAATGGGCCAAACAACGCACACATTCAGCAAgttGGTGACCGATGCTATGATGAGAAGATGTACGAGGCAGCTAAACTACTATATAACAATGTATCCAACTTTGGCCGTCTGGCCTCGACTCTGGTGCATCTTGGCGAGTATCAGGCTGCTGTCGATGGGGCCCGCAAAGCCAACAGCACAAGGACCTGGAAAGAGGTTTGCTTTGCCTGTGTTGATGGGAAGGAGTTTCGTCTGGCTCAGATGTGTGGATTGCATATTGTCGTTCATGCTGATGAACTGGAGGAGCTCATCAACTACTACCAGGACCGTGGCTATTTCGAGGAGCTGATCACCATGTTGGAGGCGGCACTAGGGCTGGAGCGTGCTCACATGGGCATGTTCACAGAACTGGCCATCCTATACTCCAAATTCAAACCACAGAAGATGAGGGAGCACCTGGAGCTGTTCTGGTCCAGAGTCAACATTCCCAAGGTTTTGAGGGCAGCAGAGCAGGCTCACCTGTGGGCGGAACTAGTCTTCCTGTATGATAAGTATGAGGAGTATGACAACGCCATCATCACCATGATGAACCATCCTTCAGATGCCTGGAAAGAGAGCCAGTTCAAGGACATCATAACCAAGGTTGCTAATGTTGAGCTGTATTACAAAGCCGTCCAATTCTACCTGGAGTTCAAACCGCTGTTACTGAATGACCTGTTGATCGTATTGTCTCCACGTCTTGACCACACTCGTGCCGTCAACTTCTTCAGCAAGgtCAAGCAATTGTCGTTGGTAAAACCATACCTGAGGTCTGTACAGAACCACAACAACAAGGCTGTAAATGAGGCACTTAATAATCTCTTCATCACCGAGGAGGATTACCAGGCTCTGCGCACATCCATCGATGCCTACGATAACTTCGACAACATATCTCTGGCTCAGAGCCTGGAGAAGCACGAACTCATCGAGTTCAGGCGAATTGCCGCCTACCTGTTCAAAGGCAACAATCGCTGGAAGCAGAGCGTGGAGCTCTGCAAGAAAGACAAACTCTACAAGGACGCAATGCAGTATGCCTCAGAGTCAAAGGACACAGAGCTGGCTGAGGAGCTGCTGCAGTGGTTCTTGCAGGAAGACAAGAAAGAGTGTTTTGCCGCCTGCCTGTTCACTTGCTACGACCTGCTGAGGCCCGATGTGGTGCTGGAGACCGCGTGGAGGCACAACCTCATGGACTTCTCCATGCCCTACTTCATTCAGGTCATGAGGGAATACCTTAGCAAGGTTGACAAGTTGGATGCTTCAGAGTCTTTGAGGAAAGAGGAAGAGCAGCTCACAGAGGCACAACCCATTGTCTATGgcACACCCCAGCTGATGCTCACCGCAGGCCCCAACGTCGCAGTTCCCCCACAGCAGCCTTACGGCTACGGCTACCCCACGGCGACTGGCTATGGCCAACCCGCACAGCCAGGCTTCGGCTACGGCATGTAAAGCCCTCCTGCCCACAGCTGTCCATCCATCTCTCCTTAAGTTCCTTATTAGCTTACTGTGGTCTACTCACAAggttatataaagaaaaaaaagttacacgttttaaattattttccttaaaatgcaatgaaggacttcatttttatttgtgttgtcAAAGAAAATAAGCGGaccacatttttgttatttcacaTTCCATATTTAAGGCTACTTATATCacttagtttttcttttattcttttttttttcgtgagctgatttttttttttttttttttttttttttaagggggcATGGGTTGTGTATGTAAGTGGAGTGTCGAGAAGAGCAATTAACCTTAAAATATGTCGTGAAGCATCTGATTTGCACTCTGTCGTGAGAGGAAACTAATGTAGAATCTCTTAATTTTGATGTATTGTATGTGAAGAGCTTACACTGTCAGtctgtttaatgcatttcattattgtatATTCTGAAAAAGGTTAAACAATATTTGAACATGAACGTATGCATCCATGGGTACATTTAGCTAACACTAAGTAATAATCTGATATTCTACACAAATATGTAGCTGTATGGAAATTTTAAGCGCATACAGACATGAATATAGTAAATGATTTTAATCCCTTAGCCTAAACAGGTTTCCCCGATCGACCTCGTAGTTGTTAACATCTCATTCACTCCATGTGTAACAGGTGACCTTTCCTTGTATTGAATACAGTGCTCTTTCTTGTGTGAATCCATTTCCATAAACGAGCAAGGGATACATTGATTCTTCTGACTTCTGTGTTTACTCATCCGGTTCTTTGTATTGAGGTTTGTGTGTGCCAGGTGTCGTGCTGTTCTAGCTCACTATTCGGAGTGTACAGAAGAATGAATACGCAAATGGATACCAATGCTTTGTCCACCTGTAAGATTTGTGTGCGATCTGCAGATTCAGAAAACTGGGGAATAAATTCACAGGATTGTGATCGTTTTGGTGGCTTGATTGTAAATTGGCAAAGATTAAAATGAAACTCATCCATTCTCCATCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155406 lncRNA upstream 122116 10177872 ~ 10178226 (+) True G105242
XR_006252623.1 lncRNA upstream 122514 10172957 ~ 10177828 (+) False LOC122358545
TU155405 lncRNA upstream 122534 10177325 ~ 10177808 (+) False LOC122358545
TU155404 lncRNA upstream 124720 10173307 ~ 10175622 (+) True G105240
TU155403 lncRNA upstream 125421 10171862 ~ 10174921 (+) False LOC122358545
TU155630 lncRNA downstream 11346 10336766 ~ 10337446 (+) True G105395
TU155631 lncRNA downstream 11346 10336766 ~ 10337398 (+) False G105395
TU155632 lncRNA downstream 11346 10336766 ~ 10337333 (+) False G105395
TU155661 lncRNA downstream 62063 10387483 ~ 10387744 (+) True G105411
TU155663 lncRNA downstream 66039 10391459 ~ 10391718 (+) True G105413
XM_043258185.1 mRNA upstream 1067 10286955 ~ 10299275 (+) True dhx40
XM_043258186.1 mRNA upstream 1067 10292462 ~ 10299275 (+) False dhx40
XM_043258379.1 mRNA upstream 59094 10238177 ~ 10241248 (+) True LOC122358538
XM_043258146.1 mRNA upstream 101064 10190587 ~ 10199278 (+) True relb
XM_043259927.1 mRNA downstream 485 10325905 ~ 10336412 (+) True vmp1
XM_043259641.1 mRNA downstream 18016 10343436 ~ 10350306 (+) True rps6kb1b
XM_043258984.1 mRNA downstream 27741 10353161 ~ 10386231 (+) False snx19b
XM_043258983.1 mRNA downstream 27741 10353161 ~ 10378210 (+) True snx19b
XM_043259009.1 mRNA downstream 106145 10431565 ~ 10441298 (+) True LOC122358985
TU155413 other upstream 92890 10204839 ~ 10207452 (+) True G105248
TU155356 other upstream 189901 10093655 ~ 10110441 (+) False ypel2b
TU155072 other upstream 626997 9669634 ~ 9673345 (+) True G105011
XR_006252680.1 other upstream 676370 9588789 ~ 9623972 (+) False traf4a
unassigned_transcript_2149 other upstream 725399 9574855 ~ 9574943 (+) True trnar-ucu_52
XR_006252665.1 other downstream 27741 10353161 ~ 10390600 (+) False snx19b
TU155825 other downstream 396552 10721972 ~ 10728395 (+) True G105513
TU156035 other downstream 1045216 11370636 ~ 11371927 (+) False LOC122358628
unassigned_transcript_2151 other downstream 1495141 11820561 ~ 11820632 (+) True trnap-cgg_29
TU156910 other downstream 2516757 12842177 ~ 12847378 (+) False spa17

Expression Profile