RNA id: XM_043259959.1


Basic Information

Item Value
RNA id XM_043259959.1
length 2181
RNA type mRNA
GC content 0.44
exon number 9
gene id arfip2a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17769204 ~ 17777553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAGTCAGTTACAGCAACAATAACTAGCGTTATTCACCAAAGAGTTGTCAAAAGGATGCATTCATTTCTGAAGTAATACTGACCCCTTCTGGTCATACAGAGAACAGCAGAAAACTTCTATTTATCCCAAAGCTACGTTTTCACTTTTAACCTTTGCGCAAACTATTATTTCCATTTGGATTCTATTTCGGTGCGAAAACGAATAAAAGTACTGCCGTTTGTTCCAAAGCAATGCCGCGACGCCGCAGCAACCCCGAAGAATGTCTCGTCGTCACTTCCGTTTGGAGAGAGCGGAGAGGATTTGCGTTACCGAGCGACCAAGAGGATTGACAGAGGAGCCCGTGGAGATTATTTGCCCTCCAGACATCCGTTGAAAACACTCACAAATCGCGTTTTCATCATGGAATAATCCGAAACGCTGTCGCGGGCGGTTCGGTTCAGCGGTTGAGAAGGCGAACGGATATTCATCATGACAGATAGTATTTTGAGCAAAGCCGCCACTATGGAAATCCCCATCAACAGCAATGGGGACAGCAGGACGGCAGAGGACGACAGTCTTGAGCAGGACTTGCAGCAAGTGATGGTGTCTGGACCAAACCTGAATGAAACCAGTATAGTGTCTGGAGGCTATGGAGGGGCAGCAGAGGGCATCATACCCACCAGTTCCATCAAAGacATCCGCTCCAAATCCAGGGGCATCACTCCCAGCCAATCAGCCGCCAGTCGGATAGCAAACCAGCCGGGACATTACCCAGctcccagcatgcaccacAGCAACAGCAACCCATCTATGATGTCAGAGGAAGCCACGAGAGGAGTAGCGGTAGAGAAATTTGACAGCGTGAAAAAGTGGAGCATTAACACGTACAAGTGCACAAAGCAGATGTTTTCAGAGCGCTTTGGTCGTGGCACAAAGACGGTGGACCTGGAGCTTGAGGCTCAGATTGATGTGCTAAGAGAGACTAAGATGAAGTATGAGCGTATTCTGAGACTAGCACGTGAGCTCACCAACCACTTCTACAACATGGTGCAGACTCAGCAGGCTCTTGGAGACACCTTTGCTGATCTTAGCCAGAAATCACCAGAATTGCagGATGAGTTTGGCTATAATGCAGAGACACAAAGACTGCTATGCAAGAATGGAGAGACGCTCCTGGGTGCCATCAATTTCTTTGTGTCCAGCATTAATACATTAGTCAACAAAACCATGGAGGACACACTCATGACCATCAAGATGTATGAGAATGCAAGACTGGAGTTCGATGCCTATAGAACAGACCTGGAGGAGTTGAGTGTGGGTCCGCGGGATGCTGCGGCCATGATGCGCTTTGAGATTGCTCAGCAGCAGTACCAGATCCAAAAAGACAAGTATGAACGACTGCACAGTGACGTTAGCATCAAACTCAAGTTTCTGGAGGAGAATAAGGTAAAAGTGATGCACAAGCAGCTCCTACTGTTTCATAATGCCATCTCGGCATATTTCGCTGGAAACCAGCAGCAGCTGGAACAGACTCTCAGACAGTTCAACGTGAAATTGAAGCCACCGGGTTCTGACAAGCCGTCATGGCTTGAGGAGCAGTGATCACTTTGTTCGACGTAAAGAGACACTCAAAACACGGAAAACGGAAATGTCTGGACGGGGACGTAAAAGCGATTcgtacgaatgatttaagagtagttgtttttaagttgccaaacctctgaagaaaaaaagaaaaaaaaaaacccagaacgtcttcaaaagaatattaattttatcaAAATGGCTTATGGAAACTAACTGTGGTTACGTTTTACAGCTGCCTTaaatatctcatatatatattcaaagtaATATGTTGCAAAATTACAATACAACCCAATCGCATAACTCAAACTTTCggtaaaaacattaacattttctgAGGCGTTCATAGTCATATTCACAGAACTGTTCCATATCCAGCGGGAAGCTCGCAGGCCAGTTTATGTACTTTGTTTTATCATAGAGTAGAGCCGAAAGGAATGAATGTTGTGCTTGTgcgtttgtttttaacataagGTTGTCTGAAAGAGGATTGGGTCATggtataaaaaagaaaaattgctcACTGTATGTGTCATAAGAAggttaataatatatttatatttatgtaaattgtgAAGTCCCATCtatgaaattaaaacacatttgaaagcGA

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158739 lncRNA upstream 202349 17566193 ~ 17566876 (+) True G107477
TU158729 lncRNA upstream 289177 17479848 ~ 17480048 (+) True G107468
TU158706 lncRNA upstream 311539 17454294 ~ 17457686 (+) True G107450
TU158701 lncRNA upstream 454564 17309345 ~ 17314661 (+) True G107447
TU158696 lncRNA upstream 568288 17200408 ~ 17200937 (+) True G107443
TU158831 lncRNA downstream 32780 17810333 ~ 17811203 (+) False trim3a
TU158832 lncRNA downstream 38579 17816132 ~ 17816825 (+) True G107547
TU158846 lncRNA downstream 54519 17832072 ~ 17837858 (+) False G107558
TU158850 lncRNA downstream 54519 17832072 ~ 17837858 (+) False G107558
TU158854 lncRNA downstream 54519 17832072 ~ 17860653 (+) False G107558
XM_043259800.1 mRNA upstream 18858 17660921 ~ 17750367 (+) True dchs1a
XM_043259744.1 mRNA upstream 133401 17623734 ~ 17635824 (+) True brca2
XM_043258459.1 mRNA upstream 146171 17576217 ~ 17623054 (+) False frya
XM_043258150.1 mRNA downstream 1044 17778597 ~ 17787869 (+) True fhdc4
XM_043258283.1 mRNA downstream 12292 17789845 ~ 17810768 (+) False trim3a
XM_043258285.1 mRNA downstream 20533 17798086 ~ 17810768 (+) True trim3a
XM_043258537.1 mRNA downstream 259560 18037113 ~ 18039299 (+) True LOC122358680
XM_043259084.1 mRNA downstream 443719 18221272 ~ 18237305 (+) True trpc4b
TU158422 other upstream 1255065 16513320 ~ 16514160 (+) False lyrm9
TU158282 other upstream 1532884 16089757 ~ 16236341 (+) True G107148
XR_006252631.1 other upstream 1725960 16004870 ~ 16043265 (+) True gdpd5b
XR_006252632.1 other upstream 1725960 16004870 ~ 16043265 (+) False gdpd5b
TU158204 other upstream 1885715 15881114 ~ 15883510 (+) True G107107
TU158844 other downstream 54519 17832072 ~ 18116953 (+) True G107558
TU158847 other downstream 82358 17859911 ~ 17860653 (+) False G107558
TU158878 other downstream 267464 18045017 ~ 18046904 (+) True G107574
TU158879 other downstream 267464 18045017 ~ 18046034 (+) False G107574
TU159142 other downstream 978790 18756343 ~ 18758836 (+) True G107756

Expression Profile