RNA id: TU161441


Basic Information

Item Value
RNA id TU161441
length 1109
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G109218
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 342871 ~ 352044 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttatacTCCTTAATTTAAAGTCCGTGCAATCTGCGCCGTTCAGTGTAAGCACCATCTCACTgcacttttaaattatattttagaaagcaACTAAAATAGTCTAGCACAAATAGGCGGAGCTGTCGACTATATAAGTGCCCGTTTCGAATGGGAGTCAGATGCCTTCTCCTTCAGCAATAATGAATATCTTTCACAGAAACCTGACTAAGAAGCCGCTAGCTGTAGAAAAAGCTTCTACAGTGGACCATGCCATGTTTCCACTGCTGCCATCCGACCAAAAGAGCATTTTTCTTGAGCAAATTTCCTACCTGCTGTTGTTTCAGATCCCCCCTTAACCATAACTGTGCCTATAATAATTTTCTGATATGTGCAGCACAGCTGAATCAAGAATCACTGTCCATTGCCTAAATTATAAATCTCGTAACATGACTGCTTTTTTCCATTACAGTTGCATTATAATGTTGTATTCAGGCCTAGAGTGTTAAGTGCAACAGGTGTGCACGTTGATTTCAAGGCGAGTTAAAGGACATACAAACAGATTTCTGTTGTACTTCATCAAGGACAAATTAGGTGATTTAGGTCATTTAACCTCTCATGAGTGTGATGGAAGCTCCTCTTCAACAAGGTCTCGTTCAGACATGATCATGCATACCTCTTTTTCCCAGCTCTGAACCCGCAGCTTTTTCCACTGCTCCCTCTTAGCAAAGTAATCAGGGTACATGGCTTTCTCTGAGGGATGCCAGTGATCCAGACACCATTCAGGAATTGTAGCACTCATATCTTTCATAGGATGTTCCTCCAGGTGAGTCTGGGAACACGTAGGGTTGCGGGTGCTGATTGTCCCAGAATTCCTCCTCACCTGCCTTCAGCATCATGGTGGCCTTCATCATGTCCTTCTCATGCTTGTTCTCATCAAAGCGTGCTCGCAGCAAACATGCATAGAAGCGGTATTTATCCCTGGAATAGTCAATTAACTTCTTGTCAATGGTATGGTTAAGATTAATGAGACAAAAACCTAACACAGATATAATCTTGGAtgattcattattatcattgttaggtcaatgaaacaaaataaagtattgtattgaaaaaatattagattCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161471 lncRNA upstream 102850 450294 ~ 450508 (-) True G109248
XR_006252827.1 lncRNA upstream 234889 582333 ~ 585478 (-) True LOC122360679
TU161495 lncRNA upstream 237213 584657 ~ 585503 (-) False LOC122360679
TU161496 lncRNA upstream 260636 608080 ~ 608431 (-) True G109273
TU161499 lncRNA upstream 312524 659968 ~ 660352 (-) True G109276
XM_043261994.1 mRNA upstream 934867 1282311 ~ 1292313 (-) True LOC122361052
XM_043260038.1 mRNA upstream 1149142 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 1149142 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 1197843 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 1197843 1545287 ~ 1549823 (-) True pmvk
XR_006252910.1 other downstream 47886 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 64397 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 64792 277961 ~ 278079 (-) True LOC122361151
XR_006252913.1 other downstream 66766 275987 ~ 276105 (-) True LOC122361280
XR_006252890.1 other downstream 68354 274399 ~ 274517 (-) True LOC122361170
TU161498 other upstream 285021 632465 ~ 632897 (-) True G109275
TU161510 other upstream 535015 882459 ~ 882752 (-) True G109287
TU161934 other upstream 2780617 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 3747313 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 4884767 5232211 ~ 5245461 (-) True vegfaa

Expression Profile