RNA id: TU161498


Basic Information

Item Value
RNA id TU161498
length 433
RNA type TUCP
GC content 0.39
exon number 1
gene id G109275
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 632465 ~ 632897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAAGCTTTGCGGACATTCTGTGTAGCTGTCGTGACACTCTTAAAGCAATGAATTGTGAGGATGAGCTAAATGGTGGACGCACTCTGCTACAAATTGTGGAAAAGCTGCCTGAAGACATAAAGAAAAGATGGCTCACAATAAATTATGAGATTATCAAATCGGGACGTTTACCAAAGTTAAACGATATAGTCTGTCTTGTTGAATCAGAAGCTGCTAAGAGAGCTGATCCTATCTTTGGGAATCTCCTTATGCCTGCAATTCGAAATTCTCCGGTgagtttcaaatcaaatatcaaGTCAAGCTTCAATAAGAAAAGACAAACATTCGCAACAATGTCAGTTACGACGGATGAATCCATCACATCGCCCACAACAAAGACTATTTCACGATTTAAATGTCCAAAGTGTACTGAAGTACACTTTCTGAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161496 lncRNA downstream 24034 608080 ~ 608431 (-) True G109273
TU161495 lncRNA downstream 46962 584657 ~ 585503 (-) False LOC122360679
XR_006252827.1 lncRNA downstream 46987 582333 ~ 585478 (-) True LOC122360679
TU161471 lncRNA downstream 181957 450294 ~ 450508 (-) True G109248
TU161439 lncRNA downstream 280421 346519 ~ 352044 (-) False G109218
TU161499 lncRNA upstream 27071 659968 ~ 660352 (-) True G109276
TU161506 lncRNA upstream 177136 810033 ~ 810608 (-) True G109283
TU161515 lncRNA upstream 332841 965738 ~ 966074 (-) True G109292
TU161533 lncRNA upstream 480846 1113743 ~ 1121705 (-) True G109308
TU161535 lncRNA upstream 480846 1113743 ~ 1195829 (-) False G109308
XM_043261994.1 mRNA upstream 649414 1282311 ~ 1292313 (-) True LOC122361052
XM_043260038.1 mRNA upstream 863689 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 863689 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 912390 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 912390 1545287 ~ 1549823 (-) True pmvk
XR_006252910.1 other downstream 337480 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 353991 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 354386 277961 ~ 278079 (-) True LOC122361151
XR_006252913.1 other downstream 356360 275987 ~ 276105 (-) True LOC122361280
XR_006252890.1 other downstream 357948 274399 ~ 274517 (-) True LOC122361170
TU161510 other upstream 249562 882459 ~ 882752 (-) True G109287
TU161934 other upstream 2495164 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 3461860 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 4599314 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 4602749 5235646 ~ 5245460 (-) False vegfaa

Expression Profile