RNA id: TU161533


Basic Information

Item Value
RNA id TU161533
length 1411
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G109308
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1113743 ~ 1195829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atcttcatcctgcTGATGAAGTACAAGCTTCACAGCCAGCACTACAAGCAGAAGGCGGCTCGCGTCAGTAACGTCTGTTCTCAGACCAACGGTGGCCAGCAGGGGGCCGCATCGGCCCCTCCGCCGCGCTCGTCCTCGGGGGCCTCCAGCAAGCCTTCCGTCCCGCTCGGGCTGGACAGGCAAGAAGGGTCCCATGGCCTGGAGGGGGGCTACGGAGCACTGAAAGGCACCACGGTAGTGGACTTGAACCAGTACGGGAAATCGTTCAAAGAGGACGACTCCATATCGCAATAACAAAGGGTTCGATCCCGCCTCCCTTCCCATTCTCTCCACACCTCAACCcattctgtttcttttctgttGCCGGCGTCCTGCGGCCTTACAGAGGGGTTTCTCCTGTCCGAGGCAAACTCGCAATCTGGAAGCCAAAAGCAGAACGCCAGATTAAACGGGACTGGATCCAATCTATCAGTAGGACAAGCCGCGGTCGGAAGGCGATCTTCAATCCTTTATGCAAAACTCTCCCCAAGCCCTGGATATCATGTGCCTCTTCGGTGCATTTGAgcaatgttttctattttaaactgGAGGTCATCAAAGCATTCGATgggaagagagagggaaaacTCTGTGGATGTTCTTTGTGGGAAATACTATGACAAAATATCAGTGCGAAGCAGTGCCAAAGGACTGGATTTAACGTTCTCCTGAAGACCCGTGCGAATACGGACTCATCAAAGTTGGATCAGACATTGACGGGTCGTATCGAGTTAACATTTGTGGACCTTCTGGAGCACTTCATTATGGATTCCTCGGCTAATGACTCTCTTCATTGGGAAACGAAGGCCCGGATCGATCTTCAGCTGATTAACAAACATGGCGAGTGTGTTCTTGGGATCTGGAGATTAGGTCAAACAGGAGAGAACATCGATTATCACAACGCACTAAAACTTTCCCCATCTCCCGTATCATCACGGATTGAGGGTAAGACGCTCTTGAGAACTCTGGATCTGACAGACACTAAACACTCTCTGACAAATAAGtactcttcttcttcttcttcttcttcttctttttttttttttttttctcctccaatTGACTGTGGACGTCTTTGTATGTGAGGTACACCTTCAGCCATCTctgattttaatcatttgatttcaaggagaaaataatacaaaataaaaaaatgaaaatacggGATGGAATTTTATGCTTTCATAGGTACTCTGTGTggatttataaagaaataaagtatttttcttCAAGGCTCGtggaaatgatttttattaaccCAGAACTGGGCTTTTTCTGCTGTGATTATTTtctataatgaaatatattgaaaGGTTTCTCCGGCAGCTCTTTGGGGCTGAGTGTAATGGAAGTTAAGTCGAGCATACTCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161515 lncRNA downstream 147669 965738 ~ 966074 (-) True G109292
TU161506 lncRNA downstream 303135 810033 ~ 810608 (-) True G109283
TU161499 lncRNA downstream 453391 659968 ~ 660352 (-) True G109276
TU161496 lncRNA downstream 505312 608080 ~ 608431 (-) True G109273
TU161495 lncRNA downstream 528240 584657 ~ 585503 (-) False LOC122360679
TU161543 lncRNA upstream 159165 1280870 ~ 1281255 (-) True G109316
TU161547 lncRNA upstream 203915 1325620 ~ 1325934 (-) True G109320
TU161698 lncRNA upstream 399578 1521283 ~ 1521485 (-) True G109430
TU161692 lncRNA upstream 406388 1528093 ~ 1542296 (-) True G109425
TU161707 lncRNA upstream 514711 1636416 ~ 1636997 (-) True G109439
XM_043261994.1 mRNA upstream 160606 1282311 ~ 1292313 (-) True LOC122361052
XM_043260038.1 mRNA upstream 374881 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 374881 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 423582 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 423582 1545287 ~ 1549823 (-) True pmvk
TU161510 other downstream 230991 882459 ~ 882752 (-) True G109287
TU161498 other downstream 480846 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 818758 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 835269 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 835664 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 2006356 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2973052 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 4110506 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 4113941 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 4237805 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile