RNA id: TU161543


Basic Information

Item Value
RNA id TU161543
length 386
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G109316
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1280870 ~ 1281255 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGTTTGGATCTTTTTTCTATGTGAATAGAATtgattttgtcttatttaataatcagaaatgtcatttgttttgaCTCTAATTTCTTAGGAGATGAATTTGTCTCATGTGTTAGtgaagttttagtttttttttgctgattttaatATTGTCTGACGTGACTTAACTGAGATGGGAAATGTATTCCCACTGTAGCCAATTGTACATTAGAAACATACACTTATCGTACAGTCTTTGTCAGAAccacatgctttttttcttttttagactAGTTCATGGAGGAAGTGCctattaatattgtaatgtaaacaGCGATGaagaattgattttaatttaacaaaatgaaaaatgcagctGTTATATGAAGCCATAATTGTATATAAAGG

Function

GO:

id name namespace
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161535 lncRNA downstream 85041 1113743 ~ 1195829 (-) False G109308
TU161533 lncRNA downstream 159165 1113743 ~ 1121705 (-) True G109308
TU161515 lncRNA downstream 314796 965738 ~ 966074 (-) True G109292
TU161506 lncRNA downstream 470262 810033 ~ 810608 (-) True G109283
TU161499 lncRNA downstream 620518 659968 ~ 660352 (-) True G109276
TU161547 lncRNA upstream 44365 1325620 ~ 1325934 (-) True G109320
TU161698 lncRNA upstream 240028 1521283 ~ 1521485 (-) True G109430
TU161692 lncRNA upstream 246838 1528093 ~ 1542296 (-) True G109425
TU161707 lncRNA upstream 355161 1636416 ~ 1636997 (-) True G109439
TU161708 lncRNA upstream 359522 1640777 ~ 1641312 (-) True G109440
XM_043261994.1 mRNA upstream 1056 1282311 ~ 1292313 (-) True LOC122361052
XM_043260038.1 mRNA upstream 215331 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA upstream 215331 1496586 ~ 1509311 (-) False LOC122359849
XM_043260624.1 mRNA upstream 264032 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 264032 1545287 ~ 1549823 (-) True pmvk
TU161510 other downstream 398118 882459 ~ 882752 (-) True G109287
TU161498 other downstream 647973 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 985885 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1002396 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1002791 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1846806 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2813502 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3950956 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3954391 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 4078255 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile