RNA id: TU161692


Basic Information

Item Value
RNA id TU161692
length 2073
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G109425
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1528093 ~ 1542296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGGACTGTCAGCTCGAGGAAATAACGCCATCTTGCCGTCCTGCTGCATGCCGTCCACCTGAACCGCTGTTTCCTGTGAGATCAATGCGTCGCGTGTGTCCGCTGTGTCTTTAAGCCGCATCTCCTGGTTTTGTTTTTCGGGCTGAATTGGTGCTCTATCTCCCGTTTTGTCCTGGGCAGCTCGTAGTCGGATTACTTCTCCTTGCAGCTGGTTGTATTTGCGCTGTAGCTCTGCCAGATCTCCTCGACCGCCCTCAGGACCGCCTGCCTCCAGCACTACTGCTGTAGTGGGACACAAGTCCTTCTGCATGTACACCTCCAGGATTGAGTCCTGCTTGATCACTGCAGCCTGCGGACGTAGCAACGATGAGTCGCCAAGCACGTGCTTTGTCTGAAATCTCAACATTTAGCGCGCACCTCTGTCTAAATCTCACCTGCAGTGCGTGAAGCTGAGTGCTCAGGTTCACAAGTCTTTGGCAAACCTCCTACAACACAAATAGTTCAGATAGTTATCTTTggtgttcattttgtttttttaaagcttccTTTAGGCGTACCTCGTTCAACATCTTGTCCTGCAGCTGGTTCCCATTCCTGTCCTGTGAaatgtaatgataaataatCGTGATGACGAATCCTCAATCCAATGTTTGCTGCAGTGCCAGCAGAGGAACattgtttgtgtaaaatatcAGACATTTACCTTGTTAGGCGGTCTGTTTATTTCATGGGTTCCGTTaactgatatttttcctatttcagcaaaaaaagaaTAGTGTACTTTAGATAATTAACGTCtagataattaaaaatgaaatatttaacacGGACCACAATGTATGCCAATGATAAAAAGAAGGTACCTTTTGTTTTAGAGGTGAATTGTACCTCTGTCGATTCACCGTTCAATCTGCCGGACTGTGGACGCTCAATGCAGGAACCCAACAGCACTTCACTTAGCCTGTCCACTgaagtttgaaataaataagaaagcaGTGTGAATGCCCTTCATTACCGAGTGTACTCTATAATGCTGTACGCTCCTCTGCTTACCCTCAACAATGGCGTCATTCAGTAGCTTTTCCGCCTGGGGAGCGTAGGGCGTATCTGCTCTGAATATATTTCTAGAGTTTGAGGGAACGTTAACATTCTGACCTCCGGTGGCCTCGGCCAAATCAGAAAACAACGTCACGCGCTCCTGTAACAGCTCCAAAACTTCACGATCCTTCTGCTGGATATcagctagagagagagagagcaagaaaccaaacaaaaatgtaaaaaaaaaaaaactgagcaaagCTAAGGCGACAGATTTTTGATAGAAACCTCTGAGCCGTCGTAGCAAAGCTTTGTCCTCGGTTTCGATCAGAGGGAAATCCTCTCTCGATGGACAGCTGCATTGAGAGGAATAAAGAGATGAAGCGATTAAGTGTTTGGTGTTGCTTGTGTGGAGATATATTTCAGAGGTGCAGATGTTGGGGCAAAGAATTTTGAATTGACTCTGACTTGCTCACTGTCTGCTGAATGATTTTCATCCAAGTGTTTCTGTCGTCTTTGGAGGCGGCGTGGAGCTCGTACATCTCTGGAGGTGTGGAGTGACTGATGAGGAACATTCCTCGCTCCTGATTGGCTATATCTCTCACAATCAAATTCTGAAGGCACAGTACTGCCGGTTTGtcctgtgaaaaagaaaaattgcatattttaaaaacacgcCACGTTGAACATTAAGGTGTTTCGAAGTTGTCTTTATCTGGAGTAAGTAAACTAAATTCAACATTAACTAAAAAGAAGATTCTACTTTTATATTGCAGGTAATCCATCTTTTGTCTATAGAGAAATTAAGTtacataaagtaacattttgGCATATGTCTTTCAAATTCAATCAAAATGAAAGGTTTGGATTACACCATAAAAGTCATTGGATGAAAAGGATGAAACAACTTAGAAATAGTTTTCTGTGGCACAAAGTAGGGCTAAAATAACTCTAAAAAATGTCGTAATAGTCAATATTGCTAATTATCACAATCAATTTTTGAATCTCTATTTATCTCTACTTTAAAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161698 lncRNA downstream 6608 1521283 ~ 1521485 (-) True G109430
TU161547 lncRNA downstream 202159 1325620 ~ 1325934 (-) True G109320
TU161543 lncRNA downstream 246838 1280870 ~ 1281255 (-) True G109316
TU161535 lncRNA downstream 332264 1113743 ~ 1195829 (-) False G109308
TU161533 lncRNA downstream 406388 1113743 ~ 1121705 (-) True G109308
TU161707 lncRNA upstream 94120 1636416 ~ 1636997 (-) True G109439
TU161708 lncRNA upstream 98481 1640777 ~ 1641312 (-) True G109440
TU161709 lncRNA upstream 100334 1642630 ~ 1643043 (-) True G109441
TU161710 lncRNA upstream 101577 1643873 ~ 1644173 (-) True G109442
TU161720 lncRNA upstream 103318 1645614 ~ 1646149 (-) True G109444
XM_043260038.1 mRNA downstream 17659 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA downstream 18782 1496586 ~ 1509311 (-) False LOC122359849
XM_043261994.1 mRNA downstream 235780 1282311 ~ 1292313 (-) True LOC122361052
XM_043260624.1 mRNA upstream 2991 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA upstream 2991 1545287 ~ 1549823 (-) True pmvk
XM_043260684.1 mRNA upstream 106071 1648367 ~ 1654527 (-) False si:ch73-341k19.1
XM_043260687.1 mRNA upstream 106071 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043260686.1 mRNA upstream 106071 1648367 ~ 1654515 (-) False si:ch73-341k19.1
TU161510 other downstream 645341 882459 ~ 882752 (-) True G109287
TU161498 other downstream 895196 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1233108 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1249619 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1250014 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1585765 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2552461 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3689915 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3693350 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3817214 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile