RNA id: TU161707


Basic Information

Item Value
RNA id TU161707
length 582
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G109439
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1636416 ~ 1636997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGCAGTTAAACGCGGCGTTTGGAGAATTAAAAACCAGAATAACAGGTTGTAGGTTACTGGAGGAGACAGACACAGCATCCTAAAATTCACTCCAGGCGCACGGGGGGGAagagaaaaaatgaataaatagagtATCCAAAGCCTGTAGAAACGGTCTTCGGTAAAATCCAGAGAGAGGGGGGCATTGGTGTCATAAGGGAGTCAATCTTCGGCAAACGCGCGCGATGCCCCGTCAGCTCAACATCGTGACAGAAACGGTCCAGAAAACACGTCGACGCCGAGGCAGCTCTCCGAAGATCCAGGTTTGCCGGTCACAAACTCCACAAAGAGTTTAAAACGCAGATAAGATCCAGGGGTCTTCTGGAGACGAGCGCGTGGAGAGATGACACTGCCATGATCCAAACCGAGATATCCAGTCTTTGGTCAGAGCGCTCTCGTTTGGTCTCCGGTTCCTCTCTGACAGACGCGCGGACGCGCACTGCTGGTCATTTCTGGCGACGCCGGTGCTCCTCCAGCTCCAGAGCTGCAGTTAAACATTCCCGCGGTATTGGCCCGTCCTCCAGTCCACGCAGATATCTGC

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0097485 neuron projection guidance biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161692 lncRNA downstream 94120 1528093 ~ 1542296 (-) True G109425
TU161698 lncRNA downstream 114931 1521283 ~ 1521485 (-) True G109430
TU161547 lncRNA downstream 310482 1325620 ~ 1325934 (-) True G109320
TU161543 lncRNA downstream 355161 1280870 ~ 1281255 (-) True G109316
TU161535 lncRNA downstream 440587 1113743 ~ 1195829 (-) False G109308
TU161708 lncRNA upstream 3780 1640777 ~ 1641312 (-) True G109440
TU161709 lncRNA upstream 5633 1642630 ~ 1643043 (-) True G109441
TU161710 lncRNA upstream 6876 1643873 ~ 1644173 (-) True G109442
TU161720 lncRNA upstream 8617 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA upstream 8804 1645801 ~ 1646149 (-) False G109444
XM_043260624.1 mRNA downstream 86485 1545287 ~ 1549931 (-) False pmvk
XM_043260625.1 mRNA downstream 86593 1545287 ~ 1549823 (-) True pmvk
XM_043260038.1 mRNA downstream 125982 1496586 ~ 1510434 (-) True LOC122359849
XM_043260039.1 mRNA downstream 127105 1496586 ~ 1509311 (-) False LOC122359849
XM_043261994.1 mRNA downstream 344103 1282311 ~ 1292313 (-) True LOC122361052
XM_043260684.1 mRNA upstream 11370 1648367 ~ 1654527 (-) False si:ch73-341k19.1
XM_043260687.1 mRNA upstream 11370 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043260686.1 mRNA upstream 11370 1648367 ~ 1654515 (-) False si:ch73-341k19.1
XM_043261004.1 mRNA upstream 19551 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA upstream 19551 1656548 ~ 1659893 (-) False nt5c3a
TU161510 other downstream 753664 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1003519 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1341431 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1357942 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1358337 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1491064 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2457760 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3595214 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3598649 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3722513 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile