RNA id: TU161747


Basic Information

Item Value
RNA id TU161747
length 1737
lncRNA type sense_over
GC content 0.39
exon number 2
gene id prdm1a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1741120 ~ 1964161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCCTCACTGCCATGCTCGCTCAGACGATATGTAGATAATGCAGGAAATGGAGGGGTTTGATGTGGAGAGCATGGTAGAGAAACAGATTTTTGGCCTGCTCTGGCAGGAGATGGATTTTAAGGCGTCTTATCACAAAGGTAGCACTGGAGGAGATCTGCACCCCCCACCACCTGCATTATCTACATATCGTCTGAGCGAGCATGGCAGTGAGGCTTCTGTCATCAAGGTTCATTGCAGCAGCCCTATCCAGCTCCTACCTGTCAAGGTTAAAAAGGAGACAGAGGAGGCCATGGAAACCTAGCTAACTAGAGGCTTGCCTGACTAGCTCTCTAGGCCAGGTTATGGACAGCCACACGTATACGTAATTCTTCTCAAAGAATCAGGCTATGGCCTTTATGTTCAGGGACTTGAGTACTCAGGGCTAACAGACATCGTTCCAGTCCATCAGTGGTCCAGTATGTCCGACgcaaattaaaaagacaatcatattcttttattaatattattattattgttgttattaatattatttgctcTTCTtggtgtttattttagtttgatacgtaatctatttaatttattgttcaaCGCATCATCCTTCACAACCAATACgtggaaaaaatgtttacaatgacTGGTTATATCATTgtaatttactgttttatatatttccttttttctttattcttttgtgGATAGTAACTGTAAATAGTGTCCCAGTTGACTGTGATTTCATGCATGACTGCAAAGAGCTCACCACAttcaggtttatttttaatgtgggCTTTGAAGTCAGAGGTAGACCTTTTTGTTgaaggcatttttttaaactataggAGAGGTCAGAGGTTACATATCTATGTGTACGtgttttacataacatttattcTCTTAAAGTTGAGCTCTACACAATATAATAAGTACAAAAAgggcatattatatattaccgACAACTGTTACCTCAAATgtcagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtgtGTGCTTGAACTGAGAGACGTCAGAGTTTGTTTTGCTACTTGAAGAGGAAATCAAATGTCCCAATGTGCAGGTCTACATGTGGTCCAAAGAATAGCAGTCTGTCTAGCTGTCACACACAGGCTGTGAGACTGACACTGCATTTTCTTACTTATGTGTGGCACATTACTGAAACCAAAACGATAAAGAAACGAGAATGTGGAAAAGATAACCAAAGTGAactcttttgtttattttcagagaTTTGTTCAAGTTCAGCGTGAGCTGCTGCAACTGTCTGCTCTGCAGGTCTGTGATGATGTTTATGGACACTCCACATCTCTTTGGCCTTTGTATGCACtggttcttttttcttttgtcttacGTTTGtaccttttctttgtttttatgattttgtgtAGCGATATTAGTAGGGCGGTTTATCAGCAACGTGTGCTGCGAGGTAGTAGCGTCTCATACACTTTCTGTCCTAAAGTATGACCAAAGTCTACACCTCATCTtcagctttaaattaaaaaaaaagactgtctttgtttacatactGGTTTACGTAGCTATTTAAGTACAGCtttgacaaaatgtaaattataatataaatcttCACTGATCTAAAGCATTTTTgtctcttgtgtgtgttttttttttcatgtaaaacgGGGCTCATTCTCCTCTAAACCATTATATGGCACAAAAATTCACCATAGCACTTTCCTAAACATTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 94971 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 94971 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 96947 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 98077 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 99808 1640777 ~ 1641312 (-) True G109440
TU161776 lncRNA upstream 255405 2219566 ~ 2225804 (-) True G109481
TU161777 lncRNA upstream 309391 2273552 ~ 2273936 (-) True G109482
TU161780 lncRNA upstream 314855 2279016 ~ 2279655 (-) True G109485
TU161785 lncRNA upstream 436525 2400686 ~ 2400892 (-) True G109490
TU161796 lncRNA upstream 548614 2512775 ~ 2513567 (-) True G109500
XM_043261290.1 mRNA downstream 21005 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 36399 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 78493 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA downstream 81227 1656548 ~ 1659893 (-) False nt5c3a
XM_043260686.1 mRNA downstream 86605 1648367 ~ 1654515 (-) False si:ch73-341k19.1
XM_043261422.1 mRNA upstream 36620 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 736160 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 935152 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 935152 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 935152 2899313 ~ 2908777 (-) False sim1a
TU161510 other downstream 858368 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1108223 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1446135 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1462646 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1463041 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1163900 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2130596 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3268050 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3271485 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3395349 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile