RNA id: XM_043260182.1


Basic Information

Item Value
RNA id XM_043260182.1
length 3658
RNA type mRNA
GC content 0.46
exon number 17
gene id prdm1a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1741120 ~ 1964161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACACAGCCTCTATGTGTGGCTGGGACCAGAGCGTCCTGgcTGCTTCTCATCACAGCTCGGCCATGCTGACTACTGAGGATCACCCTACACCGTGAGACAATGAGGAGCTCAAGATGGATGTAGAGGATGTAGACATGACAAAATGGACGGAGGAAGAGTTTGAGGAGAAATGCACGTACATCGTAAAAGACCACACCTGGGAGGGTCCTCTGGAAAACACAGAGCTCACCCGGGGGGCGTCCTTACCCAGAAACCTGGCATTCAAACACCCAGCAGACTCTAAAGAGGTAATCGGTGTAGTAAGCAGAGAATACATCCCTAAAGGCACACGGTTTGGCCCTCTTGTGGGAGAAAGTTACACTGCAGAAAATGTCAGCAAAGATGCGAACAGGAAGTACTTCTGGCGGATATACTCAAGTGGGGAGTTCCATCATTTTGTGGATGGACTAGATGAAGAGAAGAGTAACTGGATGCGTTATGTGAATCCAGCTCACTCCCAGCAGGAACAGAACCTTGCAGCCTGCCAAAACGGCATGAACATCTATTTCTACACGGTCAAGGCCATTCCTGCAGATCAGGAGCTACTGGTGTGGTACTGCCCTGAGTTTGCCCGTCGTCTCAACTATCCTGCCTCTGGAGAAATTATGATGCAAAAACTCAagCAGAGCCTGATCGAAGCCACACAGCAAGCGACTGAAGTCAAGCACCCAGTGAAAAGAGAACACAGTGTTTCAGAGATTTTGAAAGATGTACTGCAAGAACCCAGCAGACCACTTCCCACGTCCCGTTGCCCCAACAGCCCAGACCGACCTCTTTACCCCCAGTGCTGTCTATCCACTCCGCCCTTCCCTAGCGAAGACTTTTTAAAGACTACCACAGTGTTTGGCCTCCCGAACCGCTCTCACAGAAAGTGTTCAGTGACACCCAGCCCTTCAGCACACAGCAGTCCGGAGAGCAGTCCAGAAAGCAGTCCCACACCAGCATCCCTTGAGCCAAGAGAcaccttctctttctctccagcaCTCTATAGCCGTGGCCTGAACCACTACCCAGGCTACTCACCAGCAGCAGGCTCCATGCCATTCTACCCTAACCCGCACTATTCTCGCTACCTCATGCCCCACTACCCTGTTAGTAGTTTGAGTGGGCCACCTACTTTGGGCGGTATATCACACATGTACCCCTTTTATAGTGGCTTGGCCCCTCATGTACCCTTCCCACCTGGCATGCTTCCGTCCGAGGGTAGTCGACAATTTCTGCTTCCACCTGACTCTCCGGCTCAGGACATCCTGCTACCAGCGGCCAGTGCCTTTTCTGCAGCCACCTCTCTGAAAGACAAACCAGCTCATGGGCATGGGCATGGGCATGGGCACCCTTATGCTCCCGCTGGTGGGTCCCCAACAGCTGGCTCTGCAGCCTCTACAGGACGTGTTCCTACCAAGCCTACCTCAGCAATCCTAAATACCAGCCGCTCAGAGGAAAAGGCGATCAATCTCAGCAAGATGAAACAAGGCTCCTCAGGCTACAAAAGTCTAGATTACCCACTTAAGAAGCAGAACGGGAAGATCAAGTATGAGTGCAATGTCTGCACCAAGACTTTTGGTCAGCTGTCCAATCTCAAGGTGCACCTGCGAGTCCATAGCGGTGAACGACCCTTTAAGTGTCAGACCTGCAATAAAGGTTTCACTCAGCTGGCCCACCTGCAGAAACACTATTTGGTCCACACAGGAGAGAAACCCCACGAGTGCCAGGTGTGTCACAAGCGCTTCAGCAGCACTAGCAACTTGAAGACCCATTTGCGACTGCACTCTGGTGAAAAGCCCTACCAGTGCAAGATCTGCCCAGCCAAGTTTACACAGTTTGTCCACCTCAAGCTGCACAAACGGCTGCACACAAAACGTCCACACCAATGCCCGCATTGCCACCGTAACTACATTCACCTCAGCAGCCTGCGGCTCCACGTCAAAGGCTACTGCTTAGCGGTTTCTCTCCCCAGCTGCAGTCTTGATGAACTCAATCCAGAGCGAGAAATCGAGCGCTTTGACATCAGCGATAATGCGGATAGACTGGAGGAAATGGAGGGGTTTGATGTGGAGAGCATGGTAGAGAAACAGATTTTTGGCCTGCTCTGGCAGGAGATGGATTTTAAGGCGTCTTATCACAAAGGTAGCACTGGAGGAGATCTGCACCCCCCACCACCTGCATTATCTACATATCGTCTGAGCGAGCATGGCAGTGAGGCTTCTGTCATCAAGGTTCATTGCAGCAGCCCTATCCAGCTCCTACCTGTCAAGGTTAAAAAGGAGACAGAGGAGGCCATGGAAACCTAGCTAACTAGAGGCTTGCCTGACTAGCTCTCTAGGCCAGGTTATGGACAGCCACACGTATACGTAATTCTTCTCAAAGAATCAGGCTATGGCCTTTATGTTCAGGGACTTGAGTACTCAGGGCTAACAGACATCGTTCCAGTCCATCAGTGGTCCAGTATGTCCGACgcaaattaaaaagacaatcatattcttttattaatattattattattgttgttattaatattatttgctcTTCTtggtgtttattttagtttgatacgtaatctatttaatttattgttcaaCGCATCATCCTTCACAACCAATACgtggaaaaaatgtttacaatgacTGGTTATATCATTgtaatttactgttttatatatttccttttttctttattcttttgtgGATAGTAACTGTAAATAGTGTCCCAGTTGACTGTGATTTCATGCATGACTGCAAAGAGCTCACCACAttcaggtttatttttaatgtgggCTTTGAAGTCAGAGGTAGACCTTTTTGTTgaaggcatttttttaaactataggAGAGGTCAGAGGTTACATATCTATGTGTACGtgttttacataacatttattcTCTTAAAGTTGAGCTCTACACAATATAATAAGTACAAAAAgggcatattatatattaccgACAACTGTTACCTCAAATgtcagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtgtGTGCTTGAACTGAGAGACGTCAGAGTTTGTTTTGCTACTTGAAGAGGAAATCAAATGTCCCAATGTGCAGGTCTACATGTGGTCCAAAGAATAGCAGTCTGTCTAGCTGTCACACACAGGCTGTGAGACTGACACTGCATTTTCTTACTTATGTGTGGCACATTACTGAAACCAAAACGATAAAGAAACGAGAATGTGGAAAAGATAACCAAAGTGAactcttttgtttattttcagagaTTTGTTCAAGTTCAGCGTGAGCTGCTGCAACTGTCTGCTCTGCAGGTCTGTGATGATGTTTATGGACACTCCACATCTCTTTGGCCTTTGTATGCACtggttcttttttcttttgtcttacGTTTGtaccttttctttgtttttatgattttgtgtAGCGATATTAGTAGGGCGGTTTATCAGCAACGTGTGCTGCGAGGTAGTAGCGTCTCATACACTTTCTGTCCTAAAGTATGACCAAAGTCTACACCTCATCTtcagctttaaattaaaaaaaaagactgtctttgtttacatactGGTTTACGTAGCTATTTAAGTACAGCtttgacaaaatgtaaattataatataaatcttCACTGATCTAAAGCA

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0007521 muscle cell fate determination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0000578 embryonic axis specification biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 95079 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 95079 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 97055 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 98185 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 99916 1640777 ~ 1641312 (-) True G109440
TU161750 lncRNA upstream 66290 1817262 ~ 2078943 (-) True G109465
TU161752 lncRNA upstream 66290 1817262 ~ 2076169 (-) False G109465
TU161753 lncRNA upstream 76190 1827162 ~ 1832332 (-) True G109466
TU161755 lncRNA upstream 76190 1827162 ~ 1841550 (-) False G109466
TU161757 lncRNA upstream 76190 1827162 ~ 2085673 (-) False G109466
XM_043261290.1 mRNA downstream 21113 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 36507 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 78601 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA downstream 81335 1656548 ~ 1659893 (-) False nt5c3a
XM_043260687.1 mRNA downstream 86701 1648367 ~ 1654527 (-) True si:ch73-341k19.1
XM_043261422.1 mRNA upstream 249809 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 949349 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 1148341 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 1148341 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 1148341 2899313 ~ 2908777 (-) False sim1a
TU161510 other downstream 858476 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1108331 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1446243 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1462754 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1463149 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1377089 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2343785 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3481239 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3484674 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3608538 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile