RNA id: TU161753


Basic Information

Item Value
RNA id TU161753
length 5043
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G109466
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1827162 ~ 2085673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACGGTGgagtgtatgtgtatttttatttgccgTTGCAGTTGTGACGTGCGTAGCCGGCCTACTCTGCCATGTACGaattaaaatgatcacattCGTAAACATGCCATGCTCTTACCTTGTCACTCAGGGTTGGATCATTGAGAGAGTAAAGCTTATTGGTGACGTCTTTGCCAATGAGGTATCTGAACACCTCGTTCAGAAACGACTCGGACTCCAGGAAGTAAGTCAGACGCTCTCTAGACCAGCAAAGGAGCTTGCAGTTTTCCTCAGCAGTGATTGTCACCTGTACATTCATGCGCATGGGACGGTTAAATGTAAAGGCTGTATATTAGTCTACTCTTCCACAACATTACCATATCTTGAGATGGCTCCCCTCATACAGAATGCTGATGGCATATTTTGAGAAGCATTGAAACCATTCAAACTATTCAATGCATGCgtttaaatgcactttattaCATTACCTGAAACCTCTCCCCCCTGTTCATCTGAGTCGATCTAAATTCTGGAGAGTCGATGAAAgcatttgtgtaaatattgtgCAGGAAATGGCCTCGGTATGATACCCTCATCCtTTGAGAAGAATGCTGAGGCGTTCATCAACAGAGGTCTTGTCTTCTGCCGCATAGACCTGGCCCTTCTTTAAAGTCTGGATGGTGCAGAACTGGCCGGTGAGCCTCTGAAACAGAGCTTCACGTACATGCAGGGGCTCGAACATGCGCTTGTACAATGACTTCAGCTCCCTGTCGATCTTAATCTGGAGTGAAACAACATAACCAAAAAAGTCAAATCAGAATCAAATTTCATTCAAAGGAAACGTGACCATCGCTACTAGCCACTGTACAGAAACTACTCTTGAAGACAGGAAGACAGAGAAAAGAATATAACCGCAAAAGCCCTCTGTACTCACAGGTCTGCGTTTATAAAGcaggaaaaagaaatgcatgaagTTCACCAGAAGGAAAACCACATTCCACACCATCACATCCAGTGTGCATCTATATAAAGTGGCCCATGCTATAAACAAAGAGCACcctgaaaaacaataaagaaaatcatttcAATGTTGTGAATCGGCAACATACTTTGAGACGGGAACATCAATGGACTTCAAACTTGGCTCACTACTACCATAGCTTCATCATGTCTGCACACTAACCATGAGGCTATCAGTGCCAAccaacttaataataataataataataataataataataataataataataataatctagcATCTCAGTATAGGTAAGTTCactctttttcattctgttATTTGAATGGTTACTTGAAGCTGCATGATATTTTGAAGCAgtaaaattataacattaattaaaatcagaTTAGTGctagtttatttataaacatagtatttattaaaggTTTGATATATTTGATACATAACAGTTTTAATTcgtatctttatttttagtttaagttttagtaattttgctaCGTTctcttgttattttttgtagtttttctaatttatttatatctttatttttcttaattaatatCACACCAGtatcaactcttttttttttttaaatgttgtttaattgcAGAGACATTTCTGGTTTTCATTAAAGTGTTTAATACAACATTAACGTTTTATATTCATTTCGATCAcgaaaaaacttttacattttagtttcaaTACCTCGCTTGATATGAGATCTACGAACCACACGAAGCTCAATCGCACCTTCTGAGCTTTTTGAAGCCTAGTACAATTGCTACAGTACACGTGTACGAccgttttaaaattaatttaacgaTGTATAAAATTTAGGATTACTAGCCTACGTTTCAACCAGCATTAATAGTCCGCCAATCAAAAGCAAGCGCGTCTCTTCTGTTTGCCGCCCGTTAGAGGGCGCTCAGTACCTGTCATCAGCAGCAGTCTGAGGAAGATCATATGAAGCGCTATCGTGGTGGGGATGAGGAAACCCAGACCAAGGCTCAGGTTGGCCAGGTGAAACAGCAGGTGATGAGACTGCTCCCAGTCCAGGCATAATGTGGCGTTTGTATCTCCAGCGACTGATGGTACACTGGAGGGCAGCGGAGATGGTGTGTAGTTTAAGGAGTCTGACATTCTCAAGTTTTCAAGCTGATGGGGAGATGGCCGTGAAGTAAACCGTTAGAACAGCCACATtcgcaaacaaaacaaagcaggcGCGGCATGCTTCCTTAAAGAAGAAGCGCTGTCTTTATCCAAAGGGTGCGCGTTCCGTATCAGTGCGCGTGAATTTCTTTTGGAATAAATGTTGTAAGCTAAATATCATTATACTAGTCTAATCTAACTATAGCCTGTCATAAGTcacgaacaaaaataaaacgcacTTTCGAAGACACCTGCAAACCAAAAACGCAGTCACTGACCTCCAATAAACTTTCTGTCTCTCCTGCTTCGCGCAAATAGCGCGTGTTGCTCAGGCTGATTAAAATGGGTTCTTTTAAAACGCTTTATTAGTGAAAACGCTGTCTACTCACCGGCGCTGTCGACGCAAGCCGTAATGTGCGCGGTCTGGAGGAATGTTAAGGCAGAAGATAAGACCGCCGTGGCCGAGCTGAGAGCTGCAGCGCGCGAGGAGCGCATTCCAGCCAGATGACAGGCGTTGACTTAAAAAGGGCACAAACCGAGCGGCCACTCCTCCGCCCGCTTGCGCCCTTCCTCCACCAGAGGGAGACGTTTACGATCGTAACCGCTTCGTCGACGCCGGAACGTGTTCCGCCACACGCCCTTAATcgtgctaaaaataaattaagcaagGGGGCCATTAGATCAGTCTCCATCGGCTATAGCTTAGGTGTAACCTAAGAATCATTGAGGATCGTAGATGGGAAGTCTGGTTATGGTTTTTATTGGAAATAAGGTTGCGGATAGGCCTGATGGTGTAGGACAACTGCACGGTTGTTTCCATTTACGcaaaacacacatatgcatagGACAATacgaagattaaaaaaataacaaaaactggCTATAACGTCTCCCTCGCTTCTGAAACGGCCCCTTCATTAGAACCTGTGGCTCTGTAAGATTGGTTATTATAGACACAAGCAAAAATCTCAGGTTgactttattgtatttcatgCGATTTAGGAAGCACTGATGATGCAGAGAGGTGAAACTATCCGTCTTCACGCGAGAGCTTGATTCAGCAGTTAACCTCCAAATATGAGTGGCTCAAACGTTTCCTATAGGAGAGAAACTTCGCCTCCTGAATAATTTCGGGATTGTTCATGTTGATAAATTGCACGGATGAACCAAACAGCGAATGCatgaaacaaagacaaaaaaacgtTTGGGGGAAAACCTAAagcttacataatatatataaaaaagaaaacacaacaacGTAGGCGATTAATCAGTCACGACTACAGAGGAGTCTCTTTCCGCCGGTTTGGTTTTACTCTGTCCCAGCACCGGCTGGGATTCACTCGTGTTTTCTATTTCTGGCTCCGGCCCGTGACAGAAGCTTGGTAACCGGAGATCGTAGCGGAACCCGCGGATGTCGAAAGCCTTGTCGTTGAGAGAGAAGAGCTTCTCCGCGATGTCGTTGCGCACCAGGAGCGCGAAGATCTTCGCGACGTAGCGGTGCTGCGCGAACAGCAGGTAGAGTTTCTTTCGTCTCCACGCCACGTACCTGCACCGGTTGTCCGCACGCAAAGTaacctgggaaaaaaaaataaaacaccagaACTCGTCCCGAATTCGAAGCTTACAGCGCGAACACAAACGCGCGATCTATTCACCTGAAAGACCCCTTCTTCCGAAGGTCTGAGGGAATCCCACTCCGGAGAGTCCAGGAACTGAAATGGATCGATGAAGTGCAAAAACTCCCCGTTCACCGTCACTCTTATCCTATGTCAGACAACGCAAATGACATATGAAAAATTACAACGCGGATAATTTCTAGCAAAGCCCATTTACTCACCTGCCTGAGATAAGCACCGAAAGCCTGTCTATGGGGGTTTTGCCCTCCACGGCGAAGCAGTGGTCTTTATCTATAGTGTAGACGTCGCCGTCACAACACTCCACGATCTTTCCGAAATGTATCAAGGACACTCCGAGTTTTTTGAACAGGTGCTCGTAGAGATCCTGGAACTCTTTATCGAAAGTGACGCTGCGCAGTCGGTAGGACACGTGGACAACTTGCGCCAGGCAGAAGGCGAAAAGCGCGAAGGTCCACGAAAACGAGTCGGTCGTGCAGGGGTCGGACCATGCCCACATCGAATAGCAGAAAAACCCGAGCGTTAAAAAGCTGAACATGTAGAGCAATCCGTAAAAGCCGCTGCCTCCCATAAATCCTAAAATCAGCAGTATATGCGCGAGATGAAACATTGATCCTTCGGGATTCTCCTTCCATTCTGAGCACACCGGGTATTCCAGGGTCTCCGCCGTCGAGTTATTCTCCGTCAAATGATCCATAACGGAAATTGTATATATCAATAATCGTATATATCAAGCTGTATACTCCTCTGAAGAGATCTGGTCTGCGGAGGTCTTCGAGCTCCTGTGGACCGACGGCTCTTCAATGCGCGCACAGAAACATAATCCTTCAGTCTCCCAGAAGGAAACCCTTACTCGAAGTTTGTAACTAAGTTCTCATTTGTGTTCACTTCAAGTGTGCTATCAGGTTAGGGAGTTTTCTCCTAAAGAGGTTGAAATATTACCGCCTACGCACTTTTCGCCCTACTCTTGTTACAGAAAGAGTTTTAATTCTTTGTTGACTGATATTTGATTAATGAATTTTAGGAAAAAAGGTTGTCAAGCCCCattatttatattgcaatattaagTGTGTGAGTATTGATACGACtgagaatttattattttattttctgttccaCGGCATGCATTCAAAAGCCATCacttcatttcttatattttgtattattcggtaagcatgtattttttttatttatatttttttcccttacagcacatttctttttcatgGACTTTATTAGTTATTGTTAATGCAGACTATTAATAAAGttctttaataaaatctgtcaaatgatt

Function

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161720 lncRNA downstream 181013 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 181013 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 182989 1643873 ~ 1644173 (-) True G109442
TU161709 lncRNA downstream 184119 1642630 ~ 1643043 (-) True G109441
TU161708 lncRNA downstream 185850 1640777 ~ 1641312 (-) True G109440
TU161765 lncRNA upstream 107797 1940129 ~ 1940862 (-) False G109471
TU161766 lncRNA upstream 107797 1940129 ~ 1941153 (-) True G109471
TU161776 lncRNA upstream 387234 2219566 ~ 2225804 (-) True G109481
TU161777 lncRNA upstream 441220 2273552 ~ 2273936 (-) True G109482
TU161780 lncRNA upstream 446684 2279016 ~ 2279655 (-) True G109485
XM_043260182.1 mRNA downstream 76190 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 107047 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 122441 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 164535 1656548 ~ 1662627 (-) True nt5c3a
XM_043261422.1 mRNA upstream 168449 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 867989 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 1066981 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 1066981 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 1066981 2899313 ~ 2908777 (-) False sim1a
TU161510 other downstream 944410 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1194265 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1532177 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1548688 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1549083 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1295729 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2262425 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3399879 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3403314 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3527178 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile