RNA id: TU161766


Basic Information

Item Value
RNA id TU161766
length 834
lncRNA type inter_gene
GC content 0.68
exon number 3
gene id G109471
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1940129 ~ 1941153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaacttgaggcggcactggaggaagcgcacagggcgcgggcacaggaacgggacggagcgcacggggcgcgggcacaggaacgggacggagcgcacggggcgcgggcacaggaacgggacggagcgcacggggcgcgggcactggaacgggacagagcgcacgtggcgcgggcacaggaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgagctaacgggacggctgggcggaaccagcgggcttactgggtagctgaacgggaacaggaactcaggatacaggggaggtgcccagtctaagtccaagtccaagtctacatcatccagctccctttgcagatccagcagccccaggtggatgatcagctcatcctcagccgatgtgtagtgggcggagctccactccgcgctctcctcgcagtcggctgtctccaccgcggggagctccgttgctggctcgcgcacctggtctgacgtatacggctcgggtcctgttacgctccacggctctgtcgctctctgtgacgatgggtccgtggtcacgctcgactccgcccccgtgtcagcagtgggctcaggctggggctcgaccatgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161755 lncRNA downstream 98579 1827162 ~ 1841550 (-) False G109466
TU161753 lncRNA downstream 107797 1827162 ~ 1832332 (-) True G109466
TU161720 lncRNA downstream 293980 1645614 ~ 1646149 (-) True G109444
TU161719 lncRNA downstream 293980 1645801 ~ 1646149 (-) False G109444
TU161710 lncRNA downstream 295956 1643873 ~ 1644173 (-) True G109442
TU161776 lncRNA upstream 278413 2219566 ~ 2225804 (-) True G109481
TU161777 lncRNA upstream 332399 2273552 ~ 2273936 (-) True G109482
TU161780 lncRNA upstream 337863 2279016 ~ 2279655 (-) True G109485
TU161785 lncRNA upstream 459533 2400686 ~ 2400892 (-) True G109490
TU161796 lncRNA upstream 571622 2512775 ~ 2513567 (-) True G109500
XM_043260182.1 mRNA downstream 189157 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 220014 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 235408 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 277502 1656548 ~ 1662627 (-) True nt5c3a
XM_043261422.1 mRNA upstream 59628 2000781 ~ 2010666 (-) True LOC122360634
XM_043260444.1 mRNA upstream 759168 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 958160 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 958160 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 958160 2899313 ~ 2908777 (-) False sim1a
TU161510 other downstream 1057377 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1307232 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1645144 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1661655 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1662050 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1186908 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2153604 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3291058 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3294493 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3418357 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile