RNA id: TU161843


Basic Information

Item Value
RNA id TU161843
length 1363
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G109538
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2825428 ~ 2828623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgttttttgtaTGACTGTGTAAAGCAGATGAATGGTTGAAAAGCTTCCCACATGTAGTGCAGTGAtagggtttctctccggtgtgggtCCTTTCGTGTCTTTTCAGATTTGACGTATGACTGAATCTCTTTTCACAGTGCGAACACGTATAAGGTTTCACTCCGATATGAATCCTCTCATGTGTTTTCAGGACTCCCGACCTACTGAATCTCTTTTCACAGTGCAGACACTTATaaggtttttctccagtgtggatcaTTTTGTGTCTTTTCAGGTCTCTCGAATCACCGAATCTTCTGCTGCAGTGTTGACATCTATAAactttctctccagtgtggatatTATTGTGCCTTTTGAGATGTACTGACTGACTGAAACTCTTGTCACAGTGCGAACACTTAAAAGGTTTCTTACCTGTGTGAATACTCTCATGCAGTTTTAAACGGCTTGCTGAAGTAAAAGTCTTTTGACACTCAAAGCACATGTGCTCTCCCACAGCAGTATGCATTTTCTGATGTACTTTCATAGTTTGTAAACGCAAAAAACTGTGAGAGCACGAATTACATAAACGTGGCTCCTCCTTTGAaataactttcaaaaacattttaccacaCTGATCGCATGCGCGCTGCTTCTCTTCAGCGTGGATGCTCACGTGATCTTTAAGGTCTGCTGAGAAACTCTTCCCACATTGGTCACAACTGAATGGCATCCCTCCAGTATGAACTCTCACATCATACTGGAGACTTGTTTTGCgcgtgaaactctttccacactgagtgCAGGTGAAAGATTTCttggcttttcttttctttaaatctttctttttgGTTTGAGGGCCACTCAAAGTTTTTTCTCCAGTTTTGACATGATTTTCCTCCTCAACTTCTCTTGATTCttgattcttttctttttcttcaatcTTCTTGTTCCTCGTGCTTTATTCTCCAGGTTTCTGGTTCTTCCTGTTTTACTGTCCAGAGTTCTGGTTTCTCTCGTTTTATTCTACGGGGTTCTTGCTCCTCGTTTTTTATTGTCCACGCTTCTGGTTCCTCCAGTTTAATAGTCTGGGGTTCCGGTTCCTCTTGTTTTATTCTCCGAGGTTCTGGTTCCTCCCGTTTAAATCCACGGGGTTCTGGTTCACTCTCTTTAACAAATACCATCTTCTGACAGCAGATGATGGTGTCCCAGATATTCCTACTTGCTTGGAAACATAATAACGATTGTGAGGCTGAGAATATTTCGTGTATTTATTGACCAgattcaaaaactgtattttcctATTTATAGAAACAGTTTATATTAAACCAGCATCACACTAAAACAACAGAGAGCGCGGTGAAACAAACCCTCTTCCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161836 lncRNA downstream 16674 2808376 ~ 2808754 (-) True G109531
TU161823 lncRNA downstream 145090 2677203 ~ 2680338 (-) True G109522
TU161825 lncRNA downstream 145090 2677203 ~ 2680338 (-) False G109522
TU161810 lncRNA downstream 295429 2528804 ~ 2529999 (-) True G109509
TU161799 lncRNA downstream 301939 2523132 ~ 2523489 (-) True G109503
TU161849 lncRNA upstream 13429 2842052 ~ 2842281 (-) True G109544
TU161940 lncRNA upstream 285219 3113842 ~ 3128916 (-) False G109600
TU161947 lncRNA upstream 515307 3343930 ~ 3418605 (-) True G109607
TU161957 lncRNA upstream 796019 3624642 ~ 3625012 (-) True G109614
TU161958 lncRNA upstream 800185 3628808 ~ 3629417 (-) True G109615
XM_043260444.1 mRNA downstream 124479 2700321 ~ 2700949 (-) True LOC122360106
XM_043261422.1 mRNA downstream 814762 2000781 ~ 2010666 (-) True LOC122360634
XM_043260182.1 mRNA downstream 1074456 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 1105313 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 1120707 1684904 ~ 1704721 (-) True foxo6a
XM_043260895.1 mRNA upstream 70690 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 70690 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 70690 2899313 ~ 2908777 (-) False sim1a
XM_043260891.1 mRNA upstream 87032 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA upstream 110368 2938991 ~ 3064578 (-) False ascc3
TU161510 other downstream 1942676 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2192531 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 2530443 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 2546954 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 2547349 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 299438 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 1266134 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 2403588 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 2407023 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 2530887 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile