RNA id: TU161849


Basic Information

Item Value
RNA id TU161849
length 230
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G109544
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2842052 ~ 2842281 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAGATTTCCATGCAgatgttataaaataatcaatttgtGAATGAGTTTTATATGAGCTTGAATAACAGGAATATTCTCTTTTATTTGGGTTCAGCATTCTCCAATCTCCAGTTAAAGTTAGATCTTTCAtataatcaattaatattttccTAGTTTGTGTATGAATTGTATCTATTTGAGTGGATCTGTCCAATATTGGGTCGAGGGTACAGTTAAAATCATCTCCA

Function

GO:

id name namespace
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161843 lncRNA downstream 13429 2825428 ~ 2828623 (-) True G109538
TU161836 lncRNA downstream 33298 2808376 ~ 2808754 (-) True G109531
TU161823 lncRNA downstream 161714 2677203 ~ 2680338 (-) True G109522
TU161825 lncRNA downstream 161714 2677203 ~ 2680338 (-) False G109522
TU161810 lncRNA downstream 312053 2528804 ~ 2529999 (-) True G109509
TU161940 lncRNA upstream 271561 3113842 ~ 3128916 (-) False G109600
TU161947 lncRNA upstream 501649 3343930 ~ 3418605 (-) True G109607
TU161957 lncRNA upstream 782361 3624642 ~ 3625012 (-) True G109614
TU161958 lncRNA upstream 786527 3628808 ~ 3629417 (-) True G109615
TU161994 lncRNA upstream 866986 3709267 ~ 3717083 (-) True G109638
XM_043260444.1 mRNA downstream 141103 2700321 ~ 2700949 (-) True LOC122360106
XM_043261422.1 mRNA downstream 831386 2000781 ~ 2010666 (-) True LOC122360634
XM_043260182.1 mRNA downstream 1091080 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 1121937 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 1137331 1684904 ~ 1704721 (-) True foxo6a
XM_043260895.1 mRNA upstream 57032 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 57032 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 57032 2899313 ~ 2908777 (-) False sim1a
XM_043260891.1 mRNA upstream 73374 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA upstream 96710 2938991 ~ 3064578 (-) False ascc3
TU161510 other downstream 1959300 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2209155 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 2547067 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 2563578 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 2563973 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 285780 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 1252476 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 2389930 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 2393365 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 2517229 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile