RNA id: TU161947


Basic Information

Item Value
RNA id TU161947
length 5454
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G109607
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3343930 ~ 3418605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCATTGGAGTGCCGACCCCGTAGGCCTTGGAGTCTATGAGGCCTCCGATCTGCGTGAGGTTGCAGTTGCGCTGAGTGACGAATTCGATGGTGGTGGACTCCATAAGGAAAGCGTAATCAGAGGTGAGCACCCGTTCAATTCCTTCCTCGATGCTCTTCACCATCACCGAATGTCTTCGACTGCTCATGAACTCCCACATCTTATCATACGTGGAGATCTTGGTTTCTTAAAGAAGGTCATTGTAGCGCCATCCTCCACCACTCCATACTCTATCTTGGTCTGCTTGGCCAGGTCATCGGCCGAGTCAATTGGAGATTCCATTCTCTCCACGGTAAGAAAGGCGGCTAGGTTAGCCGTGTAGGAGGAGATGATGATTAGGGTTAAAAACCACCAGATGCCTCCTACTATCCTGGTAGAAAGGGCTTTGGGCATGAGCTCAGATCCTAGTAAAAAGGAGCAAAGATAGCAGTCAGGGTAAAGCAGTGATCACAATGTGAGGACCAGCACCAGAACCCAGTCCAGACACAACAACTAGTTGCAGGGAAAGGCCTTGCCTGCTGACAACTGGGATGACATATCTATGCCAAAGTCAACTACGGTGAAGGTGGgaattcatttatgttttaggAGAATTTATGTGGTCAAATTTAATTAGATTACAGACTCTCAGATTTGTATTATATCATAAAGGGCTCATGATTTGCTTCCGTCTTTGAATTGCCCTACACTCTTCAATCCATTTGGCTTGTGGGCAAAAGCCAAAATGAAGAACCATTTTATGTCACAACCCACGTATAATTTTCTGTTATTCCTTAATCAAGTTGTCACCGTGGCCATGCAGAGGAAATTAATTGATGGGGAAAAGTCGGGACAATAACTAGTTGTACTAGGAGGAGATGTCAGAGGACAAGAGCACAGGGAAATAACTGGCTCCTCTTCTCAAGTTCTATGAGTCAGCTGTAAGCTTTGATCAGGCACACTGAGTCCATGGCAAAACACAATGGACTGTTGAAAAGATTAGCCGTTACATGAATTACAATTGAACTGCAAACGTGAGTTCCAATCAGGCCTCAACAGACTGGTAATGCTCTAGTGACCTGTCAATCAAGAGTTTGGATATATAACTCTAGATCCCAGACAGCCTGAACAACCAttgaaatagaaagaaagagagaattaCTCTTTCCCTGTATATACTAGCAATTCAGTTGTTAAAGCTGATATGTACATTTGTTCATCGTTGATGCTAAAAAACATTCTCCTCTTCCATCAAAGACAACCTGAAGTACAAACATTGTGGTGTTCCGTTCCAACGTGTGGCTAAATCAATTGTGTGCGTTTTGGAGAGGAATACCTGCTTCTCCAAACAAGTAGTTGGGCACAGTGAAGAAGGGGCAGGAGGAGTGTATGCAAATCTAGAGTTGCATATTTTACACATATCTCTTTTAAACAAGACTTGGCAAAATCGATCAATTAGCAGAAAAGGTGCTTTAATGCCCACAACCACAgaacattgaaaaatataaaacgaaAACTATCCTCAGAAGAAAGTTGAATGCTGTTATTTGAAAGTATCACCTGGACCATTTGATCAGGGTGACTTTATATAACCTGGTTGGGGCTGACTGTCATGTACCCAAGGTAACGTCATGTCCAAGCACGCCGTCCCACAGTTTTCTGGGGGCTGACAAGCCATGGGCAGGGGAGCCTCTCTACAGTGTAGTATTACTCATTCATCATGAGACATGCAGACAGTCAACATACACAATCCCTGCCCGTTTAGCCCTCAGCCTAATGCCACATCTTCTCTTCCAAACTAACAAAGGAATCTGAACAACTGACAGTCCCAATGACACCCTATAATTATGTTGTTATGGGGTGATGCTGTTGGACAATAATTAGTTTGACAGGAAATAATAGGTCTACCTCCTTTTTGCTATGATCCAAACACGCTAGCGTATGACTTTTAATGACCTCTGCTTTCTGAGGATATCTTATTCCTAGGTAAGAGTTGCAATCCACAGTGCCAATCGGATAGTGGGATTCAGGAGGTTGCCTAGACACACTATGATGCACCCACATTTGCAGTGAAGCATATAAGATAGGGGTTCCCAATACTGGTCCTTGAGAACGTCCaacactgtacattttaaatgtcacccTCATCAAACACATCTGATTCAACTCATTGTCTCATTAGTAAGGACTCCAAGACCTCAAATATATGTGTCAGATAAGAGGGACATCAACAATATGCAGTGTTGTTGGTTCTCCAGGACTAGGAATGAAAACCACTGATTTAGGAACATCATTCATACAGCTGAATATCACTTGTGCCTCTTGTTCAGAGGTCTTTAGAAATGTACTTGGGAAcacactgtcctgcagagtttagtttcAATTCTTATCAAGCCCATTGAACCAGCTAATCGAGCTCTTCAGGACTACTTTAAATTcccaggcaggtgtgttgaaaCATGCTGGAAATAAACTTTGAAAAGACAGTTGGGATGCAGAAGGAAAGTTGAAGACCTCTGCTCTAGTAGGATGCTGACTGCATATGGCCCTTTAACTCTTTAGCATGCTCTTTgattcattctttaaaaatcactagACAAATCGCTCTAACAACTAGAACAGCTAGGCAAAAATATCTGCaatgtttcttcatttttgACATTCAATATGAAGACAGATGTCCATGCTATCTACATTGCAAAGAGCCGGTGGCTGGTTTCAGCCAGTCCTTAAATACAAATCTATTTCACAATGTAGATTTTGCAAAGACTCACAATGCTAATGTTATATGGCAATCCATTTCCAACTGAACCATTCCATTTAACAGATGCAGTGCAGATTCAAACATTATCCATGCTATTTTGCAAACGAGGGTCTGATTGCTCTTTTGATTACTCAACCAAATATCATTATGCTATTCTGATGCAACACATACTAATGCATGCAGGTTACATGTGACTTTGTCCTTCAATCACCATAGGCCTTTCTCAATCTCAAACATTTTCAGCTGAGAAGATGTGGCATCAGGATTTggtagggttagagttagaagCCAAGAATACATATGGCTTTAGACACAAGACCAGTAATCTGTCTTTGTGTCATTCTGCCACTTTTTTGCACATGAAATTGGACTTACCTGCTCAGAGCCCCAAAGAGCGAAGACAGTGGTGGTTATGGAAAGGTTTGCATGCAACTAATGATCCCCTGATCCAACACCCACCGATAAAAACTTTCAAGTCCCACACAGtcccattcatactattggccAGCAACCAATTTGCTTCTAGAACTACATGCACAGAGGCACCCATGCATCACAGAGGGCCTGACAAGAGCAAGTTGGGACCCCCAGCAAAAGAGTGGGATGTGTGCTAAGGGGGGCAGGCAGAGGCGTCTACCTTGCTGCATGAGAGCTCCAACTCCGAACCAGAAACTATTTAGCAGGGTGAAATTGTTTTCCACCACGTCCGAGTCGGGGTTGCACGGGTGGGGGTTATACCATTCGTAGGGGCTAAACCTGTGGCaagcaacacaaaacacacaaatacattttagttcaaATAaggaatgtcaGGTCTACCTATAAAGACACAAGGAGAAAGTGACAAGTTAATAAACATCAGTTAATTAGTTCTCTTGAAGAATCTATCTGTGTATTTCTTCACAAATGGTTAAAAAATTTTCTTCGTtgatgtaataaataaataagttacatGTGGGTTAGACCAGTTTGTTcatttcaggtgtttttttctATTCCAGAAACTCTCATATTCATGTCAAAGGCAACCATGCTTATCAATGCATAAGAAAAACCAGACATTTCTGATCTTATGAGCCATGGTCTGAGTGGAGTTACTAGACAGAACTTTAAGGGACAGAttacctaaaaatgaaagtctgtcatcatttactcacccttaagttCTTCCAAgtctgtatgagtttctttcgaAGAATGTGGATAATCAGATCCTCACTGACTTCGATAAAAACCATTAACTTTGGAgttaataaatgatgacagacttttcatttttgggtaaactatcccttttatataacaataagtATTAAGATGCAAGATAccacacacatatgcaaaagCATGCTCACTGCAAATCGATGCTGTGTTGGATTGTACTATCagtttgaaaatgtgttttattagcatttaattattcaagCCATTTTTCTCATCTCACACATACAAAAATGAACATGTCTCCAACTAcattaaagcacatattaagtGCAAACACTGAACAATGAACAGTCTAACAatgtttttggtaacactttattttacggttacacatATTAATCGTTCATGCATATCATTTgaatattagcaatttattagtgctaattaagcacatattaatgcttcaTTCTACACAACCTTATTCCACATCCCTGGTCCCACCCAATACCTAAagttaacaactaccttactgaCTATTTATgagcaacaaattaaaaaatgattgagGGAAAAGTTAATAGTTACCAAGCGTTACCTATTCTTCTGTAAAGTGTGACCATGTTTTTACACACCTCATGGACTTCAGGTGGTGGGACTGAGCCTAtggattattttatataatttataaatgtataaacatattttatctGTGCAcaacatgtatttacatatatttatgtatcaCTGTGCCTTATATCctagcattaaaaatacagctggGTTCAATAGATAACAACAAAGATGTATATAAAGATAAAGGTATATAACAGATATACATAAGGCCTGGAACAGTCCAAGCCTTGCAATGCTTCTTGTACTTTATTAGCGTACTTCTTCTTTTAATAGTCAAAATAGTTTAATCTGTAGTTATCCCAGAATATCCATTTAAATGGATTCATTTAGATGCCCATTTCAGAAGATCTAGTCAATTCCATCATCTCCACACCCCAATCCCTCGTACTGTGCTATCTCTCTCCCACATTGAGACTTCCCATTTACTCCAGCTAAATATAAGTGACATTACATTAGTAAAGGTTGATTGGGCGACAATTAAGCATTGTGACCCAATTCTGTTTGTGCTGAAGTagtggaataaaaaaagcatctaCAGGCTTTTCAAGAGTTGAGCAATCAGATACCAAGGAATTATTTGTCTCAGCTATTTTTCATTCTCTACCacaactgtaaaatgaaaacagaaattaTTGACTTTCAGAGAGTAGAGTACACAACATTTTCTGCATATGAGTCTATGATAAATTGATTGCTGTGCTCTCTTTAAATAGTGCTTCTGtatcaaacaaaaaataaaaataaaacattgtcaAATATGCTCTGCTCGAAAACCTGGTGAAGATCATgcactaaaatatttcaatatattacaTACCTatatcttccttttttttttttttttttttttatttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161940 lncRNA downstream 215014 3113842 ~ 3128916 (-) False G109600
TU161849 lncRNA downstream 501649 2842052 ~ 2842281 (-) True G109544
TU161843 lncRNA downstream 515307 2825428 ~ 2828623 (-) True G109538
TU161836 lncRNA downstream 535176 2808376 ~ 2808754 (-) True G109531
TU161823 lncRNA downstream 663592 2677203 ~ 2680338 (-) True G109522
TU161957 lncRNA upstream 206037 3624642 ~ 3625012 (-) True G109614
TU161958 lncRNA upstream 210203 3628808 ~ 3629417 (-) True G109615
TU161994 lncRNA upstream 290662 3709267 ~ 3717083 (-) True G109638
TU162009 lncRNA upstream 472533 3891138 ~ 3891823 (-) True G109650
TU162087 lncRNA upstream 522352 3940957 ~ 3941639 (-) True G109716
XM_043260891.1 mRNA downstream 279352 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA downstream 279352 2938991 ~ 3064578 (-) False ascc3
XM_043260895.1 mRNA downstream 428499 2899313 ~ 2915431 (-) False sim1a
XM_043261376.1 mRNA upstream 265513 3684118 ~ 3699070 (-) False hace1
XM_043261375.1 mRNA upstream 265513 3684118 ~ 3699070 (-) True hace1
XM_043261378.1 mRNA upstream 265513 3684118 ~ 3695823 (-) False hace1
XM_043260701.1 mRNA upstream 310537 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA upstream 310537 3729142 ~ 3743612 (-) False csf3r
TU161934 other downstream 213951 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 2461178 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2711033 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3048945 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 3065456 278356 ~ 278474 (-) True LOC122361163
TU162095 other upstream 676152 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 1813606 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1817041 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1940905 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 2398459 5817064 ~ 5818362 (-) False ndufa3

Expression Profile