RNA id: TU161957


Basic Information

Item Value
RNA id TU161957
length 371
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G109614
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3624642 ~ 3625012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGTGAATAAAGTGTCCCCACTACTTCAAGTTTCACGTCCTCCAGTGTGTTCATGTTGTTGGATAAGTGGCCAGTATCAGTGTAAAATCAGAATGTCTACTTGGGAAGAGCTTGCAGTTCTCCTGGTTGGGTAAGGAACCTCAGATTACTCGCACTTTGCCCGACCGATCGGAAGACTACTGCACACCGCTGACCTCCTATCTGGGTAGTTGTGGTTGCAAGGTTGGATGTCGTCACATGGCACTACAGCAATCGGCAGGACCAGGAACCATCCATCTCGCTGGGGCCTCCAAAATGTTACACCCCTGATAAAGGggagaaatgttcataaataaaaggACGAAGACTcgtgctgctgtctctgtgtCAA

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function
GO:0047372 acylglycerol lipase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161947 lncRNA downstream 206037 3343930 ~ 3418605 (-) True G109607
TU161940 lncRNA downstream 495726 3113842 ~ 3128916 (-) False G109600
TU161849 lncRNA downstream 782361 2842052 ~ 2842281 (-) True G109544
TU161843 lncRNA downstream 796019 2825428 ~ 2828623 (-) True G109538
TU161836 lncRNA downstream 815888 2808376 ~ 2808754 (-) True G109531
TU161958 lncRNA upstream 3796 3628808 ~ 3629417 (-) True G109615
TU161994 lncRNA upstream 84255 3709267 ~ 3717083 (-) True G109638
TU162009 lncRNA upstream 266126 3891138 ~ 3891823 (-) True G109650
TU162087 lncRNA upstream 315945 3940957 ~ 3941639 (-) True G109716
TU162114 lncRNA upstream 528705 4153717 ~ 4155712 (-) True G109729
XM_043260891.1 mRNA downstream 560064 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA downstream 560064 2938991 ~ 3064578 (-) False ascc3
XM_043260895.1 mRNA downstream 709211 2899313 ~ 2915431 (-) False sim1a
XM_043261376.1 mRNA upstream 59106 3684118 ~ 3699070 (-) False hace1
XM_043261375.1 mRNA upstream 59106 3684118 ~ 3699070 (-) True hace1
XM_043261378.1 mRNA upstream 59106 3684118 ~ 3695823 (-) False hace1
XM_043260701.1 mRNA upstream 104130 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA upstream 104130 3729142 ~ 3743612 (-) False csf3r
TU161934 other downstream 494663 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 2741890 882459 ~ 882752 (-) True G109287
TU161498 other downstream 2991745 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3329657 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 3346168 278356 ~ 278474 (-) True LOC122361163
TU162095 other upstream 469745 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 1607199 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1610634 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1734498 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 2192052 5817064 ~ 5818362 (-) False ndufa3

Expression Profile