RNA id: TU162009


Basic Information

Item Value
RNA id TU162009
length 686
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G109650
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3891138 ~ 3891823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagcacagggtatgccctgccccctcaggttgcgggcacactcaacaagaagtgttgcatcgtcctgggcgttGGCTCGTGGCGCCTCGCTGGCAGATATTTGTAGAGCTGCAGGCTGGGCGACCCCTAACACgtttgctagattctatagcctacgtgtggaaccggtatcctcctgtgttctcacctcaaacgggtagaagcactgagaggcccggtttcgggtcggcttgttaaccgctccagagcgtccacacagtagaccctgtcgagctcctccattcccctcggcagccagatgttgcggagcatctggcgccaggccctctcgatgaatccgtgagaaccggtgagggctgggagccatgtaaagtaccccaagaggactttatgtgtgtatttccacggcatagcctagagccccgtgtttccccggcagaccttctgcccatccaagagggttcaatcacctcccattttccatatgcaaactgaaatattgtccatatgcgtattcgttccgagacctcctacgggaaggctggacttccgcacgtccctgttcgctagaacgtgggacgttccccagtgttccagtcttacgaatgggtagtattgtagctggcttcttgtggtcgaGCCtcggcctacgccgatagactgagggggcttgtgggctcccacag

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161994 lncRNA downstream 174055 3709267 ~ 3717083 (-) True G109638
TU161958 lncRNA downstream 261721 3628808 ~ 3629417 (-) True G109615
TU161957 lncRNA downstream 266126 3624642 ~ 3625012 (-) True G109614
TU161947 lncRNA downstream 472533 3343930 ~ 3418605 (-) True G109607
TU161940 lncRNA downstream 762222 3113842 ~ 3128916 (-) False G109600
TU162087 lncRNA upstream 49134 3940957 ~ 3941639 (-) True G109716
TU162114 lncRNA upstream 261894 4153717 ~ 4155712 (-) True G109729
XR_006252809.1 lncRNA upstream 288584 4180407 ~ 4181293 (-) True LOC122360497
TU162129 lncRNA upstream 495578 4387401 ~ 4387701 (-) True G109743
TU162148 lncRNA upstream 921496 4813319 ~ 4814496 (-) True G109760
XM_043260701.1 mRNA downstream 147526 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA downstream 147526 3729142 ~ 3743612 (-) False csf3r
XM_043260702.1 mRNA downstream 147526 3729142 ~ 3743612 (-) False csf3r
XM_043260700.1 mRNA downstream 147526 3729142 ~ 3743612 (-) True csf3r
XM_043261376.1 mRNA downstream 192068 3684118 ~ 3699070 (-) False hace1
XM_043260881.1 mRNA upstream 267664 4159487 ~ 4160521 (-) True LOC122360352
XM_043260882.1 mRNA upstream 311858 4203681 ~ 4243342 (-) True LOC122360353
XM_043261771.1 mRNA upstream 620151 4511974 ~ 4614017 (-) True LOC122360932
XM_043261763.1 mRNA upstream 903987 4795810 ~ 4799825 (-) True LOC122360926
XM_043261296.1 mRNA upstream 997660 4889483 ~ 4894107 (-) False smpdl3b
TU161934 other downstream 761159 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 3008386 882459 ~ 882752 (-) True G109287
TU161498 other downstream 3258241 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3596153 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 3612664 278356 ~ 278474 (-) True LOC122361163
TU162095 other upstream 202934 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 1340388 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1343823 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1467687 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 1925241 5817064 ~ 5818362 (-) False ndufa3

Expression Profile