RNA id: TU162148


Basic Information

Item Value
RNA id TU162148
length 1155
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G109760
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4813319 ~ 4814496 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCACCTGTGGTGCTGACCGAGTTGAACATGCCAAGCAGGGTGCTGTTGAGGCAGTTGGTCGTGTTGCAACAGTTGACAGAACAATTAGCGAGAGTCCCGTTCCCGCAGGACACGCCACACGAGGCACTGCAGCTGACAGAGTAACCTGCGTCCCCTTTCATTATCTGAAGCACAACAGAGCGAGAAGTAACTCTTTAAATCAAGCCTGCATCAGTGCGCGATTTGCATGGGTTGCTTTCCGCTGGAGGTTCCCGTGTGAAAGCGCAGCGGGACGGACTGACCTCACAGGCGTATTGACCGGACAGGCAGGGCTTCGCCGTCGCGTTCATGAACTGCTCGTAACAGTCTTTCGTGCAAACAAATGCTGGACAGGACAGCTTTTTTGGGGGGTAAAAAGCGGTTTCAGTTATTACaacacattacatttacagGAAAACACTACTTAATTTACGGTATAATACCGTTTTTCGGAATttcgtatttattttaaattgccgCTTGCTTTTCTTTGCAGCTCACTGCGAAGATTACTTGCGATTTGTAAGTGAGAAGTTATCTCTAAGTAAATGATACTGTTTACCGCATTGTCTGACGAAGATGCATTCACTGAAAATATAGAGAAATCAGaaaatgtagaacaTTCAAGGGAGGGAACAAacaggacaactttgatgaaagattTTGGTACACgtcaatatattaatatattacattaagaatatatatataaatacacatgcaatgtctattctatttctattccgTCAGTCCTCGTGTgcttctattctattctgttttacttttttgtgtattattacgGTTAAATAAACAACTACATGTAAATGGACACCACAACTGCACAAGATAGATATAGACAGACCTACAGAAAAGGAATAAGAATATCAGTCGTAGTAATACCTGCTGAGGAGACAGTAGCATTCGAATTAATGGATGTGACAGACGACGTTCCTGTCACCGAGGAGCCTGATGTGGCAGCAGAAAAGAGGGACACGCTTACTGAACTCCCGGTTTGGCTCGAAGATGACGACACAGCTGTTGTCTGAGTGTTTGCTGGACTAGCAGTCGTGTCAGTCCGTACTTTAGAGAGCAGGCTCATTTgcaataaaaggaaaaacaggaaGCCTGTTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162129 lncRNA downstream 425618 4387401 ~ 4387701 (-) True G109743
XR_006252809.1 lncRNA downstream 632026 4180407 ~ 4181293 (-) True LOC122360497
TU162114 lncRNA downstream 657607 4153717 ~ 4155712 (-) True G109729
TU162087 lncRNA downstream 871680 3940957 ~ 3941639 (-) True G109716
TU162009 lncRNA downstream 921496 3891138 ~ 3891823 (-) True G109650
TU162253 lncRNA upstream 4311 4818807 ~ 4819736 (-) True G109819
TU162254 lncRNA upstream 7059 4821555 ~ 4822686 (-) True G109820
TU162262 lncRNA upstream 41158 4855654 ~ 4858398 (-) True G109824
TU162271 lncRNA upstream 45752 4860248 ~ 4861031 (-) True G109825
TU162295 lncRNA upstream 49921 4864417 ~ 4864679 (-) True G109836
XM_043261763.1 mRNA downstream 13494 4795810 ~ 4799825 (-) True LOC122360926
XM_043261771.1 mRNA downstream 199302 4511974 ~ 4614017 (-) True LOC122360932
XM_043260882.1 mRNA downstream 569977 4203681 ~ 4243342 (-) True LOC122360353
XM_043260881.1 mRNA downstream 652798 4159487 ~ 4160521 (-) True LOC122360352
XM_043260703.1 mRNA downstream 1069707 3729142 ~ 3743612 (-) False csf3r
XM_043261296.1 mRNA upstream 74987 4889483 ~ 4894107 (-) False smpdl3b
XM_043261295.1 mRNA upstream 74987 4889483 ~ 4894107 (-) True smpdl3b
XM_043261292.1 mRNA upstream 91361 4905857 ~ 4929011 (-) True limd1a
XM_043261293.1 mRNA upstream 91361 4905857 ~ 4924418 (-) False limd1a
XM_043261291.1 mRNA upstream 114662 4929158 ~ 4972573 (-) True lars2
TU162095 other downstream 717815 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 1683340 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 3930567 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4180422 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4518334 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 417715 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 421150 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 545014 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 1002568 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 1129725 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile