RNA id: TU162254


Basic Information

Item Value
RNA id TU162254
length 735
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G109820
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4821555 ~ 4822686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAAATTGAAAGTACAAGGGCCACTTTTCCTCTGTGAGGGTTTCAGTGTGCTGCTGATTGTAGAGACATCTGTACAGTAATCAGTTAAAGCAAATATCCTACAGAGAGCAGAGACATATCACAGCGGTCGCTCCAACCGACTTTCTCAGGGATCGGGCTCCTTTGGACATCTTACGATGGATGAAAAGCCCGGTTGCGGAGTCTCACTCTCGGAGAACATCAATCATTTCTATGCATGTTCTGAGAAAGGCAAAGAGGAAgtgtatttttcttctttccttcgctgccgtttctctctctctctctctctctctctctaaactACTAGCCGCAATTTCACACTAACATCGACATCTAATCACACAGAAGAGCTGCGACTTCCCTTTGCAAGCAACAGGCTGCTTGTGTCCGACTTTCTATACGACCGCAAATAACCTTACAACTATATAGTCGCTCACCGTGTAAATTTCTGATATTCTTCCGGTTAACCTGCACATCTGCTGAGCCCCTGACACTCGCCATGGGCGCACAAGCGATGAAGGTCCTTCCAGCGTTCGTCAAACATCACATGCTTCCTCTTCAGATCCGGTCGACTTCGGTTCAGACCCTCGGAGGAACTTTTAAAACGCTCACGTTCAGATCACGAAACAGCGATCCGCTGCCTATTCTGTGTGTTAAAAGCCACACACTGAGTAGAAGCAGACAGCCTGCTTTTTTTTGAACCCAAACTCCGC

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko05321 Inflammatory bowel disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162253 lncRNA downstream 1819 4818807 ~ 4819736 (-) True G109819
TU162148 lncRNA downstream 7059 4813319 ~ 4814496 (-) True G109760
TU162129 lncRNA downstream 433854 4387401 ~ 4387701 (-) True G109743
XR_006252809.1 lncRNA downstream 640262 4180407 ~ 4181293 (-) True LOC122360497
TU162114 lncRNA downstream 665843 4153717 ~ 4155712 (-) True G109729
TU162262 lncRNA upstream 32968 4855654 ~ 4858398 (-) True G109824
TU162271 lncRNA upstream 37562 4860248 ~ 4861031 (-) True G109825
TU162295 lncRNA upstream 41731 4864417 ~ 4864679 (-) True G109836
TU162380 lncRNA upstream 266215 5088901 ~ 5089304 (-) True G109887
TU162384 lncRNA upstream 354645 5177331 ~ 5177535 (-) True G109891
XM_043261763.1 mRNA downstream 21730 4795810 ~ 4799825 (-) True LOC122360926
XM_043261771.1 mRNA downstream 207538 4511974 ~ 4614017 (-) True LOC122360932
XM_043260882.1 mRNA downstream 578213 4203681 ~ 4243342 (-) True LOC122360353
XM_043260881.1 mRNA downstream 661034 4159487 ~ 4160521 (-) True LOC122360352
XM_043260700.1 mRNA downstream 1077943 3729142 ~ 3743612 (-) True csf3r
XM_043261296.1 mRNA upstream 66797 4889483 ~ 4894107 (-) False smpdl3b
XM_043261295.1 mRNA upstream 66797 4889483 ~ 4894107 (-) True smpdl3b
XM_043261292.1 mRNA upstream 83171 4905857 ~ 4929011 (-) True limd1a
XM_043261293.1 mRNA upstream 83171 4905857 ~ 4924418 (-) False limd1a
XM_043261291.1 mRNA upstream 106472 4929158 ~ 4972573 (-) True lars2
TU162095 other downstream 726051 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 1691576 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 3938803 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4188658 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4526570 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 409525 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 412960 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 536824 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 994378 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 1121535 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile