RNA id: TU162406


Basic Information

Item Value
RNA id TU162406
length 570
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G109907
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5190781 ~ 5191350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGAGAAACATACTCATTCATCCTCAATATATAGGAATATGAAAATGTGATCGTATGTATTTTTGCTAGAAAACCacactttaatgcattttattgcaacATTTGTGCCAAGTAAATAGTTGTCGTTTAAAGCGGTAAAACCCCATTAACAGCATTATAATACACACCAGGCCTCTTTGAGATTAGAGCGCGTTATCGTAAATTAAGACTAAACAAGACATTCATCCTTGTTCTGCATGAAGAATGAAATCGCTAAGCTGTGGATGATTTGGCTACTGCTGTGGATGATATGATTTCCACTTCTTTCAGCCAAAATAAGAGCGAATTAAAGTATACAAGCACATGCTCGTAGGAGAACAACAAGAGATAGCAAGCAGCGGCTCAAGACCTGTGTGATAGATGCGTGATCCTCATCGTGTCCCTCTGAACCGCATTAAAGCGTCTGTTTAATGATTGACTTTCTAATGAAAGGCTTGATGAAAGCACTTGACAGTTAGCAATGCTATAAGGTTTCTGAAAAGATATGTTTACCTGAGAAAGAATATTTATTctagcacagaaaaaaaaga

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162405 lncRNA downstream 76 5190350 ~ 5190705 (-) True G109906
TU162384 lncRNA downstream 13246 5177331 ~ 5177535 (-) True G109891
TU162380 lncRNA downstream 101477 5088901 ~ 5089304 (-) True G109887
TU162295 lncRNA downstream 326102 4864417 ~ 4864679 (-) True G109836
TU162271 lncRNA downstream 329750 4860248 ~ 4861031 (-) True G109825
XR_006252732.1 lncRNA upstream 7441 5198791 ~ 5207419 (-) True LOC122359853
TU162416 lncRNA upstream 55888 5247238 ~ 5321296 (-) True G109914
TU162462 lncRNA upstream 155055 5346405 ~ 5347559 (-) True G109942
TU162481 lncRNA upstream 204780 5396130 ~ 5396354 (-) True G109953
TU162484 lncRNA upstream 205947 5397297 ~ 5397517 (-) True G109956
XM_043260019.1 mRNA downstream 13969 5173650 ~ 5176812 (-) False rrp15
XM_043260018.1 mRNA downstream 13969 5173650 ~ 5176812 (-) True rrp15
XM_043261461.1 mRNA downstream 20151 5138694 ~ 5170630 (-) True tgfb2
XM_043260153.1 mRNA downstream 95186 5090511 ~ 5095595 (-) True lyplal1
XM_043261415.1 mRNA downstream 143900 5027170 ~ 5046881 (-) True adcy3a
XM_043260762.1 mRNA upstream 40861 5232211 ~ 5245558 (-) False vegfaa
XM_043260760.1 mRNA upstream 40861 5232211 ~ 5245434 (-) False vegfaa
XM_043260763.1 mRNA upstream 40861 5232211 ~ 5245397 (-) False vegfaa
XM_043260761.1 mRNA upstream 44553 5235903 ~ 5245461 (-) False vegfaa
XM_043261275.1 mRNA upstream 164637 5355987 ~ 5360418 (-) True ppp1r8b
TU162095 other downstream 1095277 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2060802 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 4308029 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4557884 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4895796 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 40861 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 44296 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 168160 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 625714 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 752871 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile