RNA id: TU162540


Basic Information

Item Value
RNA id TU162540
length 2039
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id LOC122360242
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5575640 ~ 5581732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCATTggcatttactttattatttttttttttatatatacagcaaTGTATATCTGTCATTCGAAAAGAAAGAAACGAGCCGATGATCGATGATCGTTTTCAAAAGCACAATGTACAAAATCGCACAGAATatacaacattataaaaaattcaAGACAAAACACGTGATGTATTTCAGTGACCGCTCCAAacgagaaagaaaaataaaataaaatgacgcGGAgcttaagacttttttttatttatgcacgATACGGTACAGTAGCTACAAACACACTTCCCAATCCTGTTCGGATGCAGTGATTTCCCGATGGAAAGCTAAAAGCCGCTGCATCCGTCCCGGCCGATCTCGGCTACTGAATTGGTCTGATAATGGACGCAGATATTTGATCCGTTTCCAAGCCGGGCCGCAGAAGCACCGAACTGATATTTATCTTCCCCGTCATTCATATCGGAGGTTTGATCGAAAACTATATAACTGTATATCGCCGGTCACCCCTAATTCTCAGAGAAGCTGAAGCTGCACAGGACCCACGGAAACACATCCTGACGTGAAACGTGAACAGACACGAATATGCTTTACAAACAACGGATATACAGTGAGGTCCAAAAGTCCGTAAGACCAAGACGAAGCGTTTCAGCTATTTCTATCGGACTAATCGTGCGACTCTTTGTACAGATGGCCGGGTTTTCTCCTTCCTGGAGGGTTTTGGAGCTCGGATCATGCTGgagacacttttccactcgttTTGTCATGCTGATAACAGAATCAGTGAAGGATTCTCGCGAGTCGACTTTTGGATCGCACCATAGGAAATGTTATCGTGACTTCTTTCTCATGATCATCGTACACTGACTGGCGTTAGGATAGCGATGCAAAAAAGGCAGACGCATACAATAACGTGCCAAACTTAAAGGggcagttcaccaaaaatgaacagctgacggcagccattgacttccgtGGTATTTCTTCCATCAGCGGCTGCCGTCAGCTGACTTTCTTCATAACGTCTTCTTCTTTTGTTCAAGGAACCCGTACAGGTTCGGAAACAACTCGAGGCcgagtaaatgattttttgggtgaactgtctctttaagggGGACGGTAAGGAAGGGTATCGTTCAGTCTCTTTACATCTAGgctcatttttctctctctctctctgcagtcgTACTGTTTGCCGGACGCCCGTCAGACGCTTCAGTCGCGCTTGGCTCGgcccttcctcttcctcctgccGCTCTCGGCCGCCGCCGGCTTCTCGTCCGTCTTGCCGGCGTTCCCGTTGCTGGAGGCCAGGGCTCCGTTGGAGGCTCCGTTGTGAAGGGCTTTGCCGGGTTTGGTCGCGGTCTCTCGTCGGGGCTGGCGGCGGTACGTCTGGTAATAGAAATTCCCAAAGAGGATGATGAAGGTGAGGGCGTATCCGATCAGACACCAGTGCATCCACTTGGGGAAGGGACAGTCGGAgtagagcgacagagccgtgtgACCGATGGTGACGTGAAACTGGACCTGCGGGAGAAATGCAACATGCGATGATATCTCTGTATTTTTGGGCCGAATGCGGCCAGCCCGTAATACAGGTACATCAGGACGTGGATGGCTGCGTTCATGTGAGCCCCGAAGAACGCtgtgagaagagaagagagagaaacacacacacattgagcCCTTCAGCACAGCATGTGATGGTTGCACGTACGCCGCTGATGCATCTGATGCTTACACTGTCCCCCGGCGACCCACTTGATGCCGATCCACCACAGAGTGAACATGGTGCAGTGGTGATAGACGTGCAGGAAGCTGATTTGGTTGAACTTCTTGCGTAAGATGAAGAACACGGTGTCGAGGTACTCCACTCCTTTAGAAACAAAGTACCACCACAGAGCCGCTGCCACCTGCCATTACGAGACGGGAAGAGTGCGTTAGTGTGGCGTAATATCGTTTAAACACTATGTTTCGTTTACTgttaatgaaaagaaatgatCAAATTTGACTCTTTAGAGCATTCCAATAATTGAAAGCAAAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252793.1 lncRNA downstream 268 5576988 ~ 5578651 (-) False LOC122360242
TU162464 lncRNA downstream 141852 5435832 ~ 5437067 (-) True G109944
TU162484 lncRNA downstream 181402 5397297 ~ 5397517 (-) True G109956
TU162481 lncRNA downstream 182565 5396130 ~ 5396354 (-) True G109953
TU162462 lncRNA downstream 231360 5346405 ~ 5347559 (-) True G109942
TU162673 lncRNA upstream 193115 5774847 ~ 5777041 (-) True G110090
TU162678 lncRNA upstream 197022 5778754 ~ 5808349 (-) False G110093
TU162679 lncRNA upstream 197022 5778754 ~ 5795317 (-) False G110093
TU162680 lncRNA upstream 197022 5778754 ~ 5781963 (-) True G110093
TU162682 lncRNA upstream 201564 5783296 ~ 5784229 (-) False si:dkey-283b15.2
XM_043260679.1 mRNA downstream 5119 5571501 ~ 5573800 (-) True dctn3
XM_043260675.1 mRNA downstream 8137 5560481 ~ 5570782 (-) False ttk
XM_043260674.1 mRNA downstream 8137 5560481 ~ 5570782 (-) True ttk
XM_043260677.1 mRNA downstream 19023 5508617 ~ 5559896 (-) True bckdhb
XM_043261998.1 mRNA downstream 158279 5418473 ~ 5420640 (-) True tpbgb
XM_043260424.1 mRNA upstream 200935 5782667 ~ 5790534 (-) False si:dkey-283b15.2
XM_043260423.1 mRNA upstream 200935 5782667 ~ 5789002 (-) True si:dkey-283b15.2
XM_043261652.1 mRNA upstream 235308 5817040 ~ 5818618 (-) True ndufa3
XM_043261179.1 mRNA upstream 239259 5820991 ~ 5822850 (-) True mrpl51
XM_043260635.1 mRNA upstream 252425 5834157 ~ 5850214 (-) False arnt
XR_006252935.1 other downstream 219240 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 333458 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 333459 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1483415 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2448940 3128061 ~ 3129979 (-) True G109600
TU162692 other upstream 235332 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 362489 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 447476 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 514943 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1500230 7081962 ~ 7083524 (-) True G110303

Expression Profile