RNA id: TU162678


Basic Information

Item Value
RNA id TU162678
length 1285
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G110093
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5778754 ~ 5808349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataataaaaataataataataataataaaaagatttcattcCACCAAACGCCTGTATGCATCTAGGAGGAAATGTGCTTCGTTATGGAAACAATgccaaacaataataataaataaaaatcttgaaaaTCAGCCTTTTTATTACACAAATTCACATTTCTTAGTGTGCTGCATAATCTGGACATGTTTTCGTGAGATTTTCTCTAGAACAGTTTTGCAGCCCCTGTGGTTGAGTTTAAACCTAGTTAGTTTAGTTGAAACACTAGTGTAAGAACATTCAGAAACAGGGCCGAGGGACTTTtaaggctctttttttttaaggtgaagGAGCTTATTCAAGGATTCACAAAAAATGATGAGTGTTTCTCCGGATGTTCTGATGGGTTAGTGAAGTGTAACACGGCCGtgcacaggaagtgacatcgcCGGGGGGCCGATACCAACATTAGTGTAACTCGTATCCGGTCTCACAGATATAGTGATATGTCACTAACAGGTAAACGGAAGTGACACGCTGAGCTCAGTAACACTCGATATGTGGCGTGAACAGCAATGACCTTCATGTACATCTTCATTCATAACATGTAAATAAACTCGAAAGAGTCAGAGATAAATAGTGTCAGTTGAGATTAAATAACGTTAAGACGGGCAGCAGAAAAGACTCAGTAAGTCAACAGCGAGGGTCAGCGTGAACAAAACATCCCACTCTTTTCTGCTAAAGCTTCGGTTAGGTCTGCCCctggtggtgatgatgatgatgatggtggtggtggtgatgaaGAATACGTCAGGCTGTTTGGTCGTCTACCCTGTTTGTGTAAGAACTTCACAGTAAAACGCTGTCAATAGCAGGAGGGAGCGTGAGATGAGGATGGAGCGTTACATGAACGTTAGTGAAGTCCTATAGAAAGTCAGCGTAATATAGTGAGTGTCTGTACAGACTAGCGTGATAGTGAGGAACACTGTAGTGTGCAAGTGTAGGAGAAGTGTGGAAATAAACGATGCAGTCAAGACCACCGAAATCCAAactgaagatgatgaagacgaCGAAGGCGATGTTCTGGTTTCCCAATGACATCCATCTCTCCATAAAACCAGAATAACAGATTGATCTGACGAGAGCTACCTTGATGAAGGATCATTGGTTTCCCAGAGAATGGAGGGAgcgcatggatggatggagtgAGGAGGAACGGGGGACTTTCAGGGCtgctcttctttcttctttaggGAAATGCGTTTCTTCCTGGCGGCGAGCATCTCGTAGAAGGGGTCCACGCTCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162673 lncRNA downstream 1713 5774847 ~ 5777041 (-) True G110090
TU162539 lncRNA downstream 197022 5575640 ~ 5581732 (-) True LOC122360242
TU162540 lncRNA downstream 197022 5578919 ~ 5581732 (-) False LOC122360242
TU162541 lncRNA downstream 197022 5578919 ~ 5581732 (-) False LOC122360242
XR_006252793.1 lncRNA downstream 200103 5576988 ~ 5578651 (-) False LOC122360242
TU162688 lncRNA upstream 1622 5809971 ~ 5813684 (-) True G110100
TU162689 lncRNA upstream 1622 5809971 ~ 5812521 (-) False G110100
TU162691 lncRNA upstream 7211 5815560 ~ 5816873 (-) True G110102
TU162695 lncRNA upstream 44083 5852432 ~ 5852762 (-) True G110106
TU162868 lncRNA upstream 94228 5902577 ~ 6184069 (-) False LOC122359839
XM_043260679.1 mRNA downstream 204954 5571501 ~ 5573800 (-) True dctn3
XM_043260675.1 mRNA downstream 207972 5560481 ~ 5570782 (-) False ttk
XM_043260674.1 mRNA downstream 207972 5560481 ~ 5570782 (-) True ttk
XM_043260677.1 mRNA downstream 218858 5508617 ~ 5559896 (-) True bckdhb
XM_043261998.1 mRNA downstream 358114 5418473 ~ 5420640 (-) True tpbgb
XM_043261652.1 mRNA upstream 8691 5817040 ~ 5818618 (-) True ndufa3
XM_043261179.1 mRNA upstream 12642 5820991 ~ 5822850 (-) True mrpl51
XM_043260635.1 mRNA upstream 25808 5834157 ~ 5850214 (-) False arnt
XM_043260632.1 mRNA upstream 25808 5834157 ~ 5850214 (-) False arnt
XM_043260634.1 mRNA upstream 25808 5834157 ~ 5850214 (-) False arnt
XR_006252935.1 other downstream 419075 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 533293 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 533294 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1683250 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 2648775 3128061 ~ 3129979 (-) True G109600
TU162692 other upstream 8715 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 135872 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 220859 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 288326 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1273613 7081962 ~ 7083524 (-) True G110303

Expression Profile