RNA id: TU162871



Basic Information


Item Value
RNA id TU162871
length 915
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122359839
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5902577 ~ 6184133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGTcctgttttcatcagctgtttggactctcattctgacggcacccattcactccagagtATTCATTGACACTATTGTACTTCTAAATTTCTCCAGAAAACCCCATCTCTCTCGGACGGCCAGAGGTTGAAGACATTTTCAgatcattttcatgtttgggtaTTTAGATATTATTGTAAACCACAGAGCagttttgttgtgcattttgtGTTGTGTAATATAAGGCCGAAAGGGTTGCTGTGGATATGCTGTATGCACAGGTGGGATGCATTCAGGGCAGCATTATGTGTGTGTCGGTGTTAAATAAAGCAGTGTAGTGATTTCAGCCAAAGTCAGGTACAGTGCAAGACCGTTGCCCTGGATCAAACCGAGGTTAAAATACTCTCTGGTGTTAGAACATGTGAGCTTTCTGTTACTAGTCCACAGCTATAACCACTAGGCGATCACAATCTCTTATGCAATGAGCAATATGTGACCAATTGAGTATATAAATGAGTAATAACAAAGATGGGATGGATCTTTTGTCACAGTAACTTGACtccaggcaaaaaaaaatactgcgtTTTAGTATATACAgtcagatttgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgtgtgtttcacgtCTGAGagtttatgtatattatgtatatcaCCTATGTTTAGACAGGTAGCAGATACTCTTTAGAAGACTAAAAAgatgcttttatatataaaacaggaAACATAGCTATTTATCTACGATAagatacatataatttatttttttcttatatggATCAGTTACTGTCTTTGAGAAATTCGAGATCTACTTGTTGCCATACATATATGTTGCTTTGTTATGGAACAAACAGTGTGTGCAGATTTTACAACagttattattcataataaacaaACGTTAAAACCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006252729.1 lncRNA downstream 2517 6177403 ~ 6180508 (-) True LOC122359843
TU162898 lncRNA downstream 40185 6142004 ~ 6142840 (-) False G110217
TU162900 lncRNA downstream 40185 6142004 ~ 6142840 (-) False G110217
TU162901 lncRNA downstream 40185 6142004 ~ 6142840 (-) True G110217
TU162897 lncRNA downstream 41704 6140539 ~ 6141321 (-) True G110216
TU162862 lncRNA upstream 6877 6191010 ~ 6194634 (-) True G110199
TU162909 lncRNA upstream 17256 6201389 ~ 6203889 (-) True G110223
TU162877 lncRNA upstream 95895 6280028 ~ 6280291 (-) False LOC122359836
XR_006252833.1 lncRNA upstream 501367 6685500 ~ 6688903 (-) True LOC122360716
TU163020 lncRNA upstream 905593 7089726 ~ 7091063 (-) True G110307
XM_043260030.1 mRNA downstream 234227 5903040 ~ 5948798 (-) True LOC122359839
XM_043261145.1 mRNA downstream 282815 5877049 ~ 5900210 (-) False celf3b
XM_043260033.1 mRNA upstream 64786 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 79371 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 79371 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 95576 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 377717 6561850 ~ 6566189 (-) False irx1a
TU162893 other downstream 83098 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 148248 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 234236 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 364663 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 823346 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 897829 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1011357 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1426496 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1426701 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1644687 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile