RNA id: XM_043260027.1


Basic Information

Item Value
RNA id XM_043260027.1
length 8555
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC122359836
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6279709 ~ 6339496 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGCTCCAGACGCGCTGAGCGGACACTCTGAGAACATCTGCACGAGTCATGGCACAGCTATCCTCCAGCACACCGCGTTAAAGCGCCGAGAGGAGCTCTCCAGAAGCGCGCGAGCGGGATGCGGGGCGCTGATGCTGCGCGATAGATTTGGAGAGATTCAGTGAGACTCGTCAGGAGAGGCACGGAGGCTGCTCGCGGCAGATTTTGGATAAGAGTCTCTAAGAGACATGGCTTGCCTGCGTTCTGTGCCGGCGAGGAGGAATCATACCGCGTCCATCTGCTCTGTGCTGCTCGTTCTGTTTCTTACACTCGGATGCCAGCAGAGATCTCTCCGCGCATCCGCAACCCTTCAGGCTGGTCCTCAAGTGAAGCGTAAAGCTCTGCTGGAGACTCTGCGGTTACCTCACAACACAGAATATGAAATCGTGGCCCCGTTCGAGGTGGACCATCAAGGGCACTACGTTTCCCATGCCGTAGCCCACCATCACCGAGAGGAAGCGCTCCGGAGGGTCAAGATGGCGGCGCGCGTGCACTTCAGGCTGCGTGGACTAGGACAGGACTTCCTTCTGGACCTGCGGCCGTCACATGACCTGATCGCCCCCAGCTTCACCGTACAGACGCTGGGCAGGAGCGGCACCAAGAGCCTGCTGCCTTTTCCTCAGGACCACCTCTGCTTCTACCACGGCGtgctgaggtcagaggtcaactCATCCGTGGCCCTGTCGACGTGTGCAGGGATGTCAGGTTTGATCAGAACTCAGGATGCAGATTACTTTCTGAAGCCGTTGCATCTACATCAGGCACTTCTGGAGAACTTCTCAGCCTCACCTGACCACCACCCCCACATCCTATACAAGAGGTCCACACCAGCGCAGACCAGCAGAGACAGGAGGTCAATTGAGCCAAAGACGGTCAGCAGAAGAGATTCAGCAGTCCCGTATCTCTGGACGGATGCAAAGGAGAACCAGCATACTCCGCAGAGACAGCACTTCTGTGGAAGACGGAAGAAATATATGCCTAAACCTCCTGAGGATGATATCTATATTTTCCCGGATGAATATAAGTTCATGCCCAGAGAGAAGCGAGCCATTATGTTCAAACCTCAGACACAGAAGAGGCTAAATGTGGAGACCCTGGTGGTGGTCGACCGCAAGATGATGGACAATCGCCATGAGAATATAACCACATATGTGCTTACTGTTCTTAACATGGTCTCAACACTTTTCAAAGATGGCACTATTGGAGGTGATATCAATGTTGTAATTGTTGGACTAATACTGCTGGATGAAGACCAGGATGGACTAGTGATTAACCATCATGCGGATCACACTCTGAACAGTTTCTGCCAGTGGCAGTCAGGGCTGGCTGGAAGAGAAGGTCGCCGCCATGATCATGCCATCCTGCTAACTGGTCTGGATATCTGCTCCTGGAAGAACGAACCATGTGACACCCTGGGCTTTGCTCCAATCAGTGGGATGTGTAGTAAGTACCGCAGCTGTACGATCAATGAGGACACGGGTCTCGGTCTGGCCTTCACCATCGCCCATGAATCTGGCCACAACTTTGGAATGGTCCATGATGGCGAAGGAAACGTATGCAAGAAGTCGGTTGGAAATATCATGTCTCCTACTTTGGCGGGACACAACGGTCTATTCTCCTGGTCATCCTGTAGCCGGCAATATCTGAACCGATTTCTGAATTCTGCTCAGGCCACCTGTCTGTCTGACGAGCCCAGCGCCATCCACGAGTACAAGTACCCTGAGAAACTGCCCGGAGAGCTGTATGACGCCGACACACAGTGCAAGTGGCAGTTCGGAGAGAAAGCTAAACTCTGCACTCTGGACTTCAAGAAGGACATCTGTAAAGCCCTCTGGTGCCGGGTCGGAAGAAAATGTGAGACCAAGTTCATGCCGGCCGCCGAGGGCTCGGCCTGCGGTCCAGAAATGTGGTGTCGTCGGGGTCAGTGTGTGAAGCAGGGGGATGATGGTCCGAAGCCGGTTCACGGTCAGTGGTCATCCTGGTCCGTCTGGTCCGGCTGCTCGAGAAGCTGTGAGAGTGGAGTGACctacagagagagacactgcAGCAGCCCCAGgCCGATGTACGGCGGCAGGTTTTGCGAGGGCTCGTCTCGCTCTTACAAACTGTGCAACACCGCAGACTGTCCTCAAAACGCCGTGGACTTCAGAGCCGCCCAGTGCGCCGAGTTCAACAGCAAACCCTTCCGCGGATGGCACTACAAGTGGAAACCCTACACACGCGTGGATGATCAGGACGTATGCAAGCTTTACTGCTTCGCTGAAGGTTATGACTTCTTCTTCGCCCTCTCCAGTAAAGTCAAGGACGGGACGCTCTGTTCACAGGACAGCTCTGATGTCTGTATTGATGGCATTTGTGagagagTGGGCTGTGACAGGGTGCTGGGATCCAACGCCGTGCCGGATCTGTGTGGCGTCTGCAAGGGAGACAACTCCACCTGCAAGATCTACAGAGGACAATACACCAAACAACATTACCTGAGCCAGTACTACCGTGTGGTGACCATACCTGCTGGAGCACGCAGCATTCGTGTGATGGAGCTCAACTCCTCCAGCTCTTATCTGGCCCTGAGGAATCTGCAGAGGAAGTATTATCTGAATGGACGCTGGACAGTGGACTGGCCCGGACGACACGCCATCGCTGGGGCTGTGTTCAACTACAAGAGACCGTACAATCGTCCCGAAAGCCTCAGCTCCACTGGACCCACCAATGAGACGCTGGTGGTGGAGGTTCTCATGCAGGGCTGGAATCCGGGCATTCAGTGGGAATACACACTGAGCAAAGAGCATACAGAGCGACGCAACCAGCCCAAGCACAGCTACACGTGGGCCATCGTTCGCTCGCAGTGCTCAGCCAGCTGCGCAGGAGGTCAGATGGTCAGTAAATCAGTCTGCTACAAGGATCTGAGGATCCAGGTGAACACGTCTTACTGTAACTCACGATCTCGGCCGTCCACCGGAGCCACGTCCTGCAACACACAGCCCTGTCCCGCAAGCTGGCGTGTGGAGGACTGGGCCGTGTGTAATCGCAGCTGTGGATCCGGAGAGCAGATCAGACAGGTGCGCTGTGTCCAGAAAAGCGGCCTGGATCAGGTGCAGACGGTGAGCGATGACCGGTGCTCACAGCCAGCGCCGGCCCGAACGCAGACCTGTAACACACACAGCTGCCCGCCGGCCTGGAGCGCCGGACCCTGGTCTCAGTGTTCTCGTAAATGTGGGAAGGGAGTGATGAAGAGAGCGgtggtgtgtgtgagcgctGTCTCTGGAGCGCTGCCGGACTCGTCCTGTGCCGCTCTGCCCAAACCCAGCGGCCAGGAGACCTGCGTGGTCAAGCGCTGCCACAAACAGCGCAAGGCCCAGTGGTTCGTCTCAACCTGGCAACCGtGTTCAGCGTCCTGTGGTAAGGGCCTGCAGCTGCGTGTGGTGAAGTGCGCAGAGAAGGACGTCGCAGGTAAATACAGAGAACTGTCAGCCAAAAAGTGCCAGCATGTGCCCAAACCCTTGGAGCTCCAGAGAAGCTGTGTCCTGTCAGACTGTCCCTCTCCTCGCGGCAGACCGGACTGGTACTCTTCCCCGTGGTCTCAGTGTACGGTGTCGTGTGGAGGAGGTGTTCAGATGCGCTCCGTCCAGTGTCTCCTTCACGGCCGGCCCTCCTCCTCCTGTGTCCTGCAGATGAAGCCGCTGATGACCCAGGCCTGTAACACTGCCTTCTGCCCTCAGCCTCAGAAGAAAGATGCGGTCTGTAAGGATCATTTCAGCTGGTGTTATCTGGTGCCGCAGCACGGCGTTTGCAACCACAAGTTCTACGGGAAGCAGTGCTGCAGGTCGTGCTCGCACACGAGCCCCTGAGACCTCCTCGGACTGAACACAAAGACATTGATAAAGACTCCGGGTCCGGAGCGTGACGCGGACCATTCCGCGCGTCGCTTTctacaggaaatgacatcatcgATGAAGCCCTCTGGAGGCGGGGCGTGAGGACTCACAGAGCTTGAAGCGGATCGAATGGGCTCCGCCTCCGGATGTAGGCCAGACCGAATCCATGTGTCCAGAAGCGTGGTTTTTCCACGAACACGCCTCATAATATCACGTGAATCACATAAACGGGCTTAATGCGTCTCATAGCGGAGAATACGGTGTCATGTAGTGGAGCTACAGTCATTTTTGGTGCTATATGTTGATATTAACGGCAGCCgagcagctgttttaaattaacACAACAACGAATCAGCGCTTTTgtatgattaatattaattctcTTATTTATTAACAATGCTGCAGTATACCAGAATGCTTTTCTGCTGTAACATACGGCTTTAATGTTGCTGTTCGGGTATAGTTgcacgatttttttttttttttttgtatgtttaatcGTGCCTCCGCAGTACTGTTACGTGTTTGGGTTTCATTATTTCGGAGGAAAACAGAATGCCAATTAAACTAGCTTAATGAACTGTCACGTTTCACGAAGTCAGCTCTCTTCGCGGGACGTTTTTAGCAGCGGCGCGGCTGCCAAGAGCCGTAAATCTGTCTTTGGTCTGACCGAGAGATGCTGCACATGTGGGTTTTGAACAGAGCTGCGTCTCCCATCATGTACAGAGTTTGTGTGCGTGTCCATGAATGTAATCGCTCGTCCGCAACCAGCGTTATTCTCGAGAGTGGACGCAGGGTTTGTTATCGACGGCGGTTCTTATTAAAGTGACGCGTGTCACGTTGCCATCACACGACAGCGTAGTCTTTCTCTCTTGGCCGTAGATTGCCGGTGATCCAGCTTCGCTGAGTCAGAGCTTTTTCTTGTTCTTCACGCGCTATTGTTTCCAGATGGAGTCAGGCTAGGCCGCTGGAGCGCGTTCAGGAATTAATATGACTTGTGAGCTTTTCACCGGCTTCTAACGTACGGCTCTGTGAAGACTTTAACAGAAAACACATACATCGCTTTACGTTATTAATGTCTCGTGGCATTCGGTGAGACTTAAACCATGTTTCGTTAGAGTCTTTTGAAAGTTTAGATGAATGTGCTGAACGTTACTGAAGCGATTCTGAACGTGGAGCAACTGCTGCCATCGCAAGCAATAAACCAGATGAAAACCATCTAATACTTACGCTGAATGATTACACGACGGCCTTCGTTGGTGCTGTGAGGCCGTGCTGATCAAACCATCAGCTCCAGaggaaaacaaatattcaatCTCACCCTAAAatccgtttttgaatccattcggACGACCTCCGGGTCTGACCGTAGAAggtttagcatagcttagcatagatcattgaatctgattagaccgttaaaacatttccaaaggGTTTCAAACTTTTCATTGCCCGCCTGGCTTAGTGCAGAAAAGTCAGGTTTTCAATAGGAAAACTCTAGAAACTCTGGACATGttagatgcttctggtctaatcagattcagtgatctatgctaagctatgctaaaagtgctatcgccgtacaataaacaaatgattatatataaatcgtTGGCTTGTTGTtctacacacatgcatacagacATAAACCACACAGTCATGAAATGCACTTATTTAGACGCTCCGATAACAACAGAAGACAATACTTTTCTGGTAAGAAGCgtgcaaactcaagcatttCTCTGTCCAGTCCGCTCgatttaaagtgttttaccACAGCTCTCgtctgttttttgtctttttatctaataaatttgtaatatgATCCATAATTGCTACCTGGTAAATTTAATAACAGTATTTCCCTCAACCGCTGCTTTTGTCATTGATTTTGGGGTTGTGCTGATCGTAAAGTGTTCTGGGTGGACCTTTCCAATTTTGGTAATAACCAAACTTCTGTGTAACCcccaaaattgtgtttttttgactCGTGGCATAAACATAGCAccttttagcgagacacgaaatacgtaccaacaagtacatatggCTGCAGTTTCCTGAAGAACGCGGCGTGTTTTAACACTGTCTGCTAGGTTTAGGGTTGATTTGATGTAGGGCATGTTTccaacatgataaaaaaaagtgcatgttttTATGAGAGCAGGTTGTTTTTTGGTTACAGTACTCCTTGAATCTAGACCCTCCtcactttaaatgtattattattatctgttacTATTGCCAAATTTTACgccaaatttctttttttgtcttaatgAAACAGTTTGATGTGTATATAAGATTCTTTCACGATTCTCATAAGCTAACATAGTATGCTTTGGATTAACGTACGTGACCCTCGTCGCCTTTCGTTCTCATTTTGTCTCAGTATTTCTTGTTCTTTTGATGCATGAAgctaaaaaatgttaaataatatgcaCTTGCTCAGAGAAGAGATGAGAAGAGATGAGCTCAGAGAACTGCTGGTCAGATTCAGGACTAGAAGTGAAGAGCTCGTCGTCACAGACTGATGGACGGCTGGTCAGTGTGATCTGTGTTCGGTCCGGTGTGGAGTGGATGTGAACTAAAACAAGAGCTTTCCTTCCAGACAGAGTTGGGGAGGGACTAGTTACAGAGTTATGTAACTGAATTACCAAAAAAATGGAACTAATTTGTTACAGTTACTGAGAAAAACGTACAgttacttgataaaaaaaatgatgattaCAGAGGGTTATATCACATCCCGATATTTCCACATTCTTCTTTTCCAAATTGCACCAATTGAGACACCGATGTTTAAGACATAACTCTTTTTTGCGttcatgctttattttgaaTCTTTTGTTAGATGCCAGTGGTTCCTGTCACAGACATGCGAAGAATTAAAACCGAAGCTTCTGATTTTAAATCAACCTTGAAACCATTCAAAGTCGTCTGTTTTTCTGGTGACTCTGCTTCCCAGTTAAATGATCGTGATCCTGAATCCATCGCTGGACTACTGTACGGTTAACACCGCCTGCTTTAAACGTCTGAACATTCATAAGAAATGTAGAAACCTAATTAAATGAATActgcatttgaaacatttacacTACTTATTTTAGACAGGGTAACTTGTGCTCTGTAACCTACTGTATAATACATATCATCTTCTGGATTGGTTGTAATGTCGTTTTCCCCCCAGCGCTGACCAGACAGACACATATTGACCGTCTCTAGTCATTAACTAACTCTGGGTCTCCGACGGCTCATTAACTCAGTGTCTGATTTGCCCACGCTTTGGTATTAATATCCCTTGTTGGTCTTAGAACAACATTTCTATCATTTAGATTGTAAGGTGAAGGCTGAGGTTGAAGCTCGAACAAAGCTCTTATCAAGCTGTCACTTCTGTCTGGTTTTAGGGTTAGTGAGCGTTTAGGGTCAGGGTTAGTTCACCCGAACTGACCTTCACACCCCTTATACTCTGTCGAGGTTATAATAACCTTGTTTTATTCGTGCCGTTTTTCCTTTGCGTGTTCAAGGTGTGATTCTTAGCGTCTTCTCCACCAGCAGCTCAGGACCGAAGGtgacattaatattaatcaaacaCCGAAACACGCTCGCTGCCGTTCATTTACTTCTGTTCCTCAGGCTGTTTACGTGAATAATTAGGCTACATTAAGAAATCAttatactctttaaataaagGATTGTGTccaaaagcattgttttttgtttcacagaGCATAAATGCCGGTGTGATCAGAATAACAACTGAGAGTGAATTTCAATGTAAATagccatgtttttttattttatacttttttttaagctgtatGCAAATTAGAATCGTAAACTTCATTTAAAAGGCGGTGtgtttgtaaatgcatgtttaagaAAGCATGTGATGGAGTGAGCAGGACAGGATCTGAAGACGGCAGACGTCTGCTGCCCTCGCCTGGTCCTCACAGAAACACGCCAGGACTTTAATACTACATACATCTGATGCTGAAACCCAACTAACTAGACCtcttaaatcaaacaaaaatgcaaatgtttaattgcatgctttttaatgtatttttcctgtatatattataatgtgaTTGATACAATCtctcatttgatttgatttgattttattatttatataaattgtcaTTGGTGTTAAACTGAGGGGAAGGCCGTTACagtcaatacaaatatttaatgagatattataaaatattatgtaatattcaagataaatattcttttaaacaagcaagtttttcattaacaaaacataaaagataatagcttttttttctgcatttactTAGTGCCCTTAACACACACTAAATCTCTAATAATAAATctctaataataaatagatagtGTAACTATTTTACttactttattaaagttatGTAACCGATCACATTTAATTCTTcccttttttttacttcatcaAATTTCCAACAGAAGTGTTTCACGTCACACTTTGAAAATCCTTCATAATTTGAGTTATAAACATCTGAGTTACAAAATCAGACTTCAGTCAGGCTTCGAGGTTAAACgcagatttaaaatcataacaagAAATAGTTTAATAGTTATTATGCTGTTTTTGAAACCAAATAAGCAGCCTATGTGGAATGctattatgtat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08630 ADAMTS16; a disintegrin and metalloproteinase with thrombospondin motifs 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162914 lncRNA downstream 71041 6139394 ~ 6208668 (-) True G110227
TU162910 lncRNA downstream 71904 6137107 ~ 6207805 (-) True G110224
TU162909 lncRNA downstream 75820 6201389 ~ 6203889 (-) True G110223
TU162862 lncRNA downstream 85075 6191010 ~ 6194634 (-) True G110199
TU162871 lncRNA downstream 95576 6183025 ~ 6184133 (-) False LOC122359839
XR_006252833.1 lncRNA upstream 346004 6685500 ~ 6688903 (-) True LOC122360716
TU163020 lncRNA upstream 750230 7089726 ~ 7091063 (-) True G110307
TU163030 lncRNA upstream 855042 7194538 ~ 7195316 (-) True G110315
XR_006252790.1 lncRNA upstream 954686 7294182 ~ 7296238 (-) True LOC122360226
TU163114 lncRNA upstream 991652 7331148 ~ 7385396 (-) False LOC122360224
XM_043260029.1 mRNA downstream 132 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA downstream 134 6263504 ~ 6279575 (-) True rprd2b
XM_043260033.1 mRNA downstream 17712 6248919 ~ 6261997 (-) True tars2
XM_043260030.1 mRNA downstream 330911 5903040 ~ 5948798 (-) True LOC122359839
XM_043261144.1 mRNA downstream 379499 5877049 ~ 5900210 (-) False celf3b
XM_043260113.1 mRNA upstream 222354 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA upstream 222354 6561850 ~ 6566179 (-) True irx1a
XM_043261656.1 mRNA upstream 311453 6650949 ~ 6690226 (-) True LOC122360792
XM_043260643.1 mRNA upstream 857595 7197091 ~ 7201319 (-) False LOC122360222
XM_043260642.1 mRNA upstream 1049220 7388716 ~ 7392318 (-) True sox4b
TU162893 other downstream 179782 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 244932 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 330920 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 461347 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 920030 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 742466 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 855994 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1271133 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1271338 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1489324 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile