RNA id: TU162885



Basic Information


Item Value
RNA id TU162885
length 844
RNA type TUCP
GC content 0.49
exon number 6
gene id G110208
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6029208 ~ 6034777 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCAGGTTTGATCAGAACTCAGGATGCAGATTACTTTCTGAAGCCGTTGCATCTACATCAGGCACTTCTGGAGAACTTCTCAGCCTCACCTGACCACCACCCCCACATCCTATACAAGAGGTCCACACCAGCGCAGACCAGCAGAGACAGGAGGTCAATTGAGCCAAAGACGGTCAGCAGAAGAGATTCAGCAGTCCCGTATCTCTGGACGGATGCAAAGGAGAACCAGCATACTCCGCAGAGACAGCACTTCTGTGGAAGACGGAAGAAATATATGCCTAAACCTCCTGAGGATGATATCTATATTTTCCCGGATGAATATAAGTTCATGCCCAGAGAGAAGCGAGCCATTATGTTCAAACCTCAGACACAGAAGAGGCTAAATGTGGAGACCCTGGTGGTGGTCGACCGCAAGATGATGGACAATCACGGCCATGAGAATATAACCACATATGTGCTTACTGTTCTTAACATGGTCTCAACACTTTTCAAAGATGGCACTATTGGAGGTGATATCAATGTTGTAATTGTTGGACTAATACTGCTGGATGAAGACCAGGATGGACTAGTGATTAACCATCATGCGGATCACACTCTGAACAGTTTCTGCCAGTGGCAGTCAGGGCTGGCTGGAAGAGAAGGTCGCCGCCATGATCATGCCATCCTGCTAACTGGTCTGGATATCTGCTCCTGGAAGAACGAACCATGTGACACCCTGGGCTTTGCTCCAATCAGTGGGATGTGTAGTAAGTACCGCAGCTGTACGATCAATGAGGACACGGGTCTCGGTCTGGCCTTCACCATCGCCCATGAATCTGGCCACAACTTTGGAATGGTCCATGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162879 lncRNA downstream 29847 5997621 ~ 5999361 (-) True G110206
TU162695 lncRNA downstream 176446 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 212335 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 215524 5809971 ~ 5813684 (-) True G110100
TU162689 lncRNA downstream 216687 5809971 ~ 5812521 (-) False G110100
TU162905 lncRNA upstream 84008 6118785 ~ 6119767 (-) True G110221
TU162910 lncRNA upstream 102330 6137107 ~ 6207805 (-) True G110224
TU162914 lncRNA upstream 104617 6139394 ~ 6208668 (-) True G110227
TU162897 lncRNA upstream 105762 6140539 ~ 6141321 (-) True G110216
TU162898 lncRNA upstream 107227 6142004 ~ 6142840 (-) False G110217
XM_043260030.1 mRNA downstream 80410 5903040 ~ 5948798 (-) True LOC122359839
XM_043261140.1 mRNA downstream 128991 5877048 ~ 5900217 (-) False celf3b
XM_043261139.1 mRNA downstream 128992 5877049 ~ 5900216 (-) True celf3b
XM_043261141.1 mRNA downstream 128995 5877049 ~ 5900213 (-) False celf3b
XM_043261145.1 mRNA downstream 128998 5877049 ~ 5900210 (-) False celf3b
XM_043260033.1 mRNA upstream 214142 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 228727 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 228727 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 244932 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 527073 6561850 ~ 6566189 (-) False irx1a
TU162864 other downstream 80419 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 210846 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 669529 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 783747 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 783748 5235646 ~ 5245460 (-) False vegfaa
TU162893 other upstream 61898 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1047185 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1160713 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1575852 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1576057 7610834 ~ 7618585 (-) False cdkal1

Expression Profile